Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1774.2 924 100.0
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 0.0e+00 1709.1 963 93.7
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 0.0e+00 1458.4 924 82.1
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 0.0e+00 1382.5 921 78.9
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1267.3 928 72.7
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1240.7 942 70.2
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1226.8 928 70.2
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1216.8 921 70.1
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 0.0e+00 1212.2 931 70.2
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 0.0e+00 1211.8 928 69.6
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1209.5 933 69.5
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1199.1 928 68.9
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1197.2 928 68.9
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1196.8 928 68.8
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1195.6 928 68.6
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 0.0e+00 1193.7 928 69.5
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 0.0e+00 1188.7 932 67.9
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1188.3 925 69.0
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1186.8 918 68.4
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 0.0e+00 1186.0 927 68.4
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1185.6 914 68.8
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 0.0e+00 1181.8 929 67.2
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 0.0e+00 1179.5 932 68.3
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1176.0 932 68.7
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 0.0e+00 1173.3 932 68.3
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 0.0e+00 1172.5 920 68.5
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 0.0e+00 1172.1 913 67.7
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 0.0e+00 1164.4 932 66.6
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 0.0e+00 1160.6 915 68.0
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 0.0e+00 1144.8 925 66.2
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 0.0e+00 1144.0 888 67.9
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 0.0e+00 1139.8 929 66.5
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1137.9 932 66.4
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1136.3 928 66.3
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 0.0e+00 1128.6 907 67.0
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 0.0e+00 1127.9 932 65.1
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 0.0e+00 1089.3 906 64.6
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1087.8 929 64.5
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1087.8 935 64.3
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 0.0e+00 1084.7 933 62.2
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 0.0e+00 1083.2 909 62.8
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 0.0e+00 1083.2 899 63.1
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 0.0e+00 1081.6 868 66.5
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 0.0e+00 1078.5 935 62.8
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 1.3e-310 1069.7 869 65.4
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 6.3e-310 1067.4 932 62.1
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 1.4e-309 1066.2 900 64.0
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.4e-309 1065.4 894 63.6
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 2.4e-309 1065.4 928 62.2
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 5.3e-309 1064.3 889 63.8
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 6.9e-309 1063.9 924 62.1
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 2.0e-308 1062.4 886 64.8
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 7.6e-308 1060.4 873 65.6
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 2.1e-305 1052.4 899 63.2
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 6.0e-305 1050.8 995 59.2
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 7.4e-303 1043.9 896 60.9
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.5e-300 1036.2 920 61.1
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 6.5e-299 1030.8 874 62.0
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 1.9e-298 1029.2 869 62.6
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 3.2e-298 1028.5 883 61.4
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 9.4e-298 1026.9 870 63.7
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 2.1e-297 1025.8 815 66.4
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 2.7e-297 1025.4 923 59.8
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 8.8e-296 1020.4 896 60.2
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 3.3e-295 1018.5 873 61.9
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.3e-294 1016.5 895 60.6
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 3.7e-294 1015.0 932 59.9
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 5.3e-293 1011.1 904 59.5
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.2e-292 1010.0 895 59.8
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 6.5e-291 1004.2 894 61.2
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 7.2e-290 1000.7 873 62.0
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.6e-289 999.6 799 66.6
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 3.0e-288 995.3 751 69.1
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 8.8e-288 993.8 894 60.6
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 8.8e-288 993.8 894 60.6
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 4.4e-287 991.5 920 58.7
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 2.4e-285 985.7 919 58.9
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 7.0e-285 984.2 865 60.2
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 4.5e-284 981.5 936 59.0
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 5.9e-284 981.1 933 59.1
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.0e-283 980.3 944 57.0
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 1.1e-282 976.9 802 66.0
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 2.7e-281 972.2 907 57.6
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 1.7e-275 953.0 908 56.6
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 8.5e-275 950.7 820 64.3
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 7.5e-263 911.0 658 71.7
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.7e-262 908.7 858 57.1
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 1.7e-259 899.8 885 54.5
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.9e-258 896.3 927 53.6
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.5e-255 886.7 880 55.2
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.5e-250 870.2 871 54.3
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.2e-249 867.1 785 59.7
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 4.6e-244 848.6 914 54.2
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 6.2e-233 811.6 803 54.5
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.9e-221 773.5 550 72.0
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 4.6e-212 742.3 675 60.0
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.2e-204 717.6 552 67.0
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 3.1e-200 703.0 714 57.3
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 6.9e-192 675.2 660 54.1
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 3.4e-191 672.9 891 43.9
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 2.8e-185 653.3 804 50.7
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 4.8e-185 652.5 883 44.2
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 5.3e-184 649.0 478 69.9
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.1e-178 631.3 897 40.6
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 3.3e-178 629.8 946 39.1
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 3.1e-152 543.5 866 39.4
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 7.2e-149 532.3 481 61.7
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 3.5e-135 486.9 415 63.6
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.2e-116 425.2 405 58.0
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 2.2e-113 414.5 953 33.5
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 1.2e-108 398.7 922 31.3
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 5.2e-107 393.3 310 65.2
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 1.2e-103 382.1 290 66.6
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.3e-102 378.6 349 56.4
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.2e-97 361.3 433 49.0
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.6e-95 355.1 363 58.7
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 2.3e-94 351.3 980 27.9
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.2e-89 334.7 950 28.5
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 9.3e-88 329.3 267 63.7
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 2.3e-78 298.1 466 44.6
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 4.5e-74 283.9 219 68.9
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.9e-72 278.5 256 60.2
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 5.7e-61 240.4 399 43.1
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.7e-60 238.8 182 66.5
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 7.7e-58 229.9 330 42.1
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.2e-55 222.6 194 60.3
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.6e-55 222.2 266 45.1
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 4.7e-55 220.7 163 68.7
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 4.1e-43 181.0 133 69.2
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 9.4e-40 169.9 129 69.8
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 4.0e-38 164.5 133 63.2
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.1e-35 154.5 177 42.9
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 5.9e-34 150.6 102 76.5
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 1.7e-33 149.1 168 53.0
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.5e-29 136.0 97 75.3
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 2.2e-28 132.1 111 62.2
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-18 99.8 197 29.4
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.3e-17 96.3 63 77.8
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 2.3e-17 95.5 151 46.4
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 1.9e-16 92.4 92 57.6
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 7.3e-16 90.5 177 39.5
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.4e-14 86.3 175 41.1
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.4e-14 86.3 68 66.2
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.0e-13 82.4 48 81.2
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 4.1e-11 74.7 105 44.8
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.1e-11 74.7 124 41.1
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 8.1e-07 60.5 60 51.7


User provided reference genes

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