Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 4.6e-236 820.8 420 100.0
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 6.3e-225 783.9 422 96.0
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.4e-179 633.3 420 77.9
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.6e-164 583.2 422 73.0
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 8.6e-150 534.3 421 64.8
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 5.8e-146 521.5 423 64.8
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 2.7e-143 512.7 437 64.3
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 7.8e-143 511.1 419 65.4
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 3.3e-141 505.8 425 64.5
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 5.8e-138 495.0 440 61.4
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 4.2e-136 488.8 425 61.6
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 5.4e-136 488.4 426 60.3
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.6e-135 486.9 423 61.7
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 4.8e-132 475.3 423 60.8
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 3.1e-131 472.6 425 58.8
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 3.1e-131 472.6 432 58.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 1.2e-130 470.7 435 58.2
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.0e-130 469.9 424 58.3
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.0e-130 469.9 425 57.6
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 8.4e-129 464.5 423 57.4
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 9.3e-128 461.1 433 57.5
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.1e-125 454.1 442 56.6
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 5.6e-125 451.8 360 66.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 9.6e-125 451.1 423 58.9
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.8e-124 449.5 423 56.3
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.8e-124 449.5 334 72.5
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.8e-124 448.7 423 59.1
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.1e-123 447.6 423 59.1
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.4e-123 446.4 423 58.9
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-120 437.6 423 57.4
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.1e-120 437.6 428 57.9
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.5e-120 435.3 427 54.8
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 7.1e-120 434.9 420 56.2
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.1e-120 434.9 423 57.7
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 6.0e-119 431.8 427 54.3
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 6.0e-119 431.8 427 54.6
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 6.0e-119 431.8 423 57.0
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 1.1e-117 427.6 435 54.7
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.9e-117 426.8 425 54.6
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 2.5e-117 426.4 423 55.8
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.3e-117 426.0 397 56.9
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 5.3e-115 418.7 423 54.8
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.2e-114 417.5 350 62.0
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.2e-114 417.5 426 56.8
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.0e-114 416.8 428 54.9
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.4e-114 416.0 425 54.1
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 7.6e-114 414.8 422 53.6
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.0e-113 414.5 428 54.7
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 2.2e-113 413.3 425 55.1
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 3.8e-113 412.5 425 55.3
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 5.0e-113 412.1 423 53.4
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 5.0e-113 412.1 422 55.0
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 6.5e-113 411.8 441 52.8
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.4e-112 410.6 449 50.8
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.9e-111 404.8 423 53.7
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.3e-110 404.1 426 55.9
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.7e-108 397.1 425 53.6
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.2e-108 396.7 436 53.2
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 9.1e-107 391.3 431 52.2
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.4e-106 389.4 428 52.3
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.4e-106 389.4 428 52.3
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 1.0e-105 387.9 395 55.2
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 3.8e-105 386.0 438 50.5
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 8.5e-105 384.8 425 52.9
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.4e-104 384.0 425 52.2
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.9e-104 383.6 425 54.6
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.2e-104 381.7 428 52.3
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.1e-103 380.2 425 51.8
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 8.8e-102 374.8 417 51.8
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.5e-101 374.0 425 52.0
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.4e-101 372.5 442 49.5
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.4e-101 372.5 429 48.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 4.4e-101 372.5 432 51.2
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.8e-100 369.8 438 47.3
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 5.9e-98 362.1 476 46.2
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 5.9e-98 362.1 424 50.7
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.7e-97 360.5 402 52.7
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.9e-97 359.8 311 60.5
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 5.0e-97 359.0 428 48.6
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 9.4e-96 354.8 450 45.6
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.1e-95 353.6 434 45.6
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 4.7e-95 352.4 447 48.3
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.0e-94 351.3 425 50.4
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.4e-94 350.9 438 47.0
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 6.7e-94 348.6 429 45.5
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 6.7e-94 348.6 426 47.9
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.1e-93 347.8 439 45.3
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.5e-93 347.4 427 49.9
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.5e-93 347.4 436 45.2
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 4.4e-93 345.9 438 46.1
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 7.4e-93 345.1 436 45.0
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 2.2e-92 343.6 428 46.5
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.8e-92 343.2 424 47.2
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 7.0e-91 338.6 448 46.7
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.3e-89 334.3 423 42.1
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-89 334.3 429 45.0
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.3e-89 334.3 427 45.9
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.7e-89 334.0 426 45.5
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.2e-89 333.6 449 45.0
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.8e-89 332.8 429 44.8
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.5e-88 330.9 423 46.1
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 7.2e-88 328.6 422 45.0
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 9.4e-88 328.2 351 51.6
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.2e-87 327.8 434 48.2
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.6e-87 327.4 428 45.8
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.0e-86 324.7 438 46.8
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.4e-86 324.3 428 45.6
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.2e-85 321.2 430 46.3
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 3.1e-83 313.2 426 43.7
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 2.7e-82 310.1 421 46.3
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 6.5e-81 305.4 429 43.8
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 2.3e-78 297.0 336 50.6
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 2.6e-77 293.5 437 42.3
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 9.8e-77 291.6 419 43.0
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.7e-76 290.8 427 41.9
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 8.3e-76 288.5 432 41.7
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.4e-75 287.7 420 42.6
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.9e-72 277.3 420 41.9
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 4.4e-69 266.2 411 42.6
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.3e-68 264.6 412 43.0
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.4e-67 261.2 418 39.0
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 4.1e-67 259.6 300 53.7
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.7e-65 254.2 273 52.0
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.3e-65 253.8 396 39.1
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 6.6e-65 252.3 273 51.6
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 2.3e-62 243.8 355 43.4
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 5.4e-59 232.6 209 59.8
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 3.5e-58 229.9 372 40.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 4.4e-53 213.0 435 36.1
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.3e-49 201.4 422 34.6
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.5e-42 176.8 230 48.3
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 6.6e-41 172.6 170 53.5
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 9.9e-37 158.7 199 46.2
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 6.4e-36 156.0 289 38.1
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.1e-35 155.2 432 33.1
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.6e-29 134.0 152 49.3
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 3.4e-29 133.7 152 49.3
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 9.9e-29 132.1 152 48.7
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 9.9e-29 132.1 152 48.7
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 6.4e-28 129.4 143 50.3
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 2.1e-23 114.4 411 26.5
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 2.8e-23 114.0 162 38.9
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.5e-21 108.2 128 50.8
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 5.8e-21 106.3 86 65.1
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 1.7e-20 104.8 112 50.0
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.6e-18 96.7 65 75.4
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 4.5e-13 80.1 275 29.1
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 9.3e-11 72.4 70 50.0
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 9.3e-11 72.4 70 50.0
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.7e-10 70.9 62 53.2
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 2.7e-10 70.9 83 45.8
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 6.0e-10 69.7 113 38.1
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.0e-09 67.4 126 36.5
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 8.7e-09 65.9 67 49.3
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 8.7e-09 65.9 67 49.3
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 8.7e-09 65.9 67 49.3
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 9.6e-08 62.4 100 41.0
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 9.6e-08 62.4 55 54.5
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 9.6e-08 62.4 55 54.5
AagrBONN_evm.TU.Sc2ySwM_117.315 Anthoceros agrestis HOM05D049954 ORTHO05D005065 2.8e-07 60.8 206 25.7
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.7e-07 60.5 56 48.2
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 6.2e-07 59.7 81 35.8
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 8.2e-07 59.3 84 42.9
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 1.4e-06 58.5 141 32.6
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 1.8e-06 58.2 50 54.0
Psat4g131480 Pisum sativum HOM05D004053 ORTHO05D005065 6.9e-06 56.2 93 34.4


User provided reference genes

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