Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.7e-108 396.0 189 100.0
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 1.4e-102 376.3 211 87.2
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 8.8e-94 347.1 188 84.0
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 2.6e-93 345.5 189 83.6
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.5e-88 329.7 192 79.7
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 2.5e-88 328.9 193 78.8
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 1.2e-87 326.6 192 78.1
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 2.1e-87 325.9 189 78.8
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 4.7e-87 324.7 189 77.2
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 3.0e-86 322.0 183 79.8
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 6.8e-86 320.9 184 81.5
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 6.8e-86 320.9 192 78.1
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 8.8e-86 320.5 192 78.6
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 2.0e-85 319.3 191 78.0
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 2.6e-85 318.9 185 78.9
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 3.4e-85 318.5 184 78.3
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 3.4e-85 318.5 184 78.3
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 9.8e-85 317.0 184 78.8
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.3e-84 316.6 193 76.2
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.3e-84 316.6 181 80.7
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 1.7e-84 316.2 190 77.4
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 2.8e-84 315.5 184 79.3
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 3.7e-84 315.1 184 78.3
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.8e-83 312.8 190 77.4
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 2.4e-83 312.4 194 74.2
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 3.1e-83 312.0 185 76.8
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 5.4e-83 311.2 184 77.7
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 2.7e-82 308.9 176 77.8
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 2.7e-82 308.9 182 79.7
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 3.5e-82 308.5 188 78.7
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 7.7e-82 307.4 184 72.8
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 1.7e-81 306.2 185 75.1
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 1.7e-81 306.2 184 76.6
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 2.3e-81 305.8 184 76.1
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 8.6e-81 303.9 188 73.4
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 1.5e-80 303.1 184 75.5
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 1.5e-80 303.1 184 75.5
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 1.9e-80 302.8 184 74.5
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 3.3e-80 302.0 168 81.0
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 3.3e-80 302.0 161 81.4
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.2e-80 301.6 194 73.7
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 5.5e-80 301.2 188 75.0
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 5.5e-80 301.2 183 73.8
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 9.5e-80 300.4 194 72.7
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.2e-79 300.1 170 78.8
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.2e-79 300.1 181 76.8
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.1e-79 299.3 173 76.9
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 2.8e-79 298.9 185 74.6
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 4.7e-79 298.1 184 72.3
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 4.7e-79 298.1 186 73.7
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.0e-78 297.0 182 72.0
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 1.4e-78 296.6 182 73.1
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.4e-78 296.6 188 71.8
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 1.8e-78 296.2 182 73.1
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 2.3e-78 295.8 186 74.7
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 4.0e-78 295.0 195 70.8
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 5.2e-78 294.7 180 73.9
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 6.8e-78 294.3 161 81.4
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.2e-77 293.5 191 72.8
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 2.0e-77 292.7 185 70.8
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 2.6e-77 292.4 184 71.7
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 3.4e-77 292.0 166 78.9
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 3.4e-77 292.0 180 73.3
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 7.5e-77 290.8 162 80.9
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 7.5e-77 290.8 189 72.5
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 6.3e-76 287.7 191 71.2
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 6.3e-76 287.7 191 71.2
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 6.3e-76 287.7 161 83.2
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 1.4e-75 286.6 191 70.7
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.8e-75 286.2 163 78.5
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 1.8e-75 286.2 189 70.4
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 2.4e-75 285.8 191 71.2
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 9.2e-75 283.9 186 68.8
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.2e-74 283.5 196 66.8
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 1.2e-74 283.5 185 71.9
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 3.5e-74 282.0 190 68.9
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 5.9e-74 281.2 184 66.8
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 1.0e-73 280.4 185 71.9
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 1.3e-73 280.0 185 71.9
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 1.3e-73 280.0 185 71.9
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 1.3e-73 280.0 183 71.6
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 1.3e-73 280.0 183 71.6
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 1.3e-73 280.0 185 71.9
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 2.3e-73 279.3 185 71.9
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 2.9e-73 278.9 185 71.9
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 3.8e-73 278.5 185 70.3
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 5.0e-73 278.1 162 78.4
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 1.1e-72 276.9 198 65.7
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 7.3e-72 274.2 188 67.6
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 1.6e-71 273.1 188 68.1
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 3.6e-71 271.9 177 70.1
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 3.1e-70 268.9 184 71.2
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 1.7e-68 263.1 148 80.4
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 1.1e-67 260.4 184 67.9
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.2e-66 256.9 229 55.0
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 2.0e-66 256.1 163 71.2
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 2.7e-66 255.8 159 74.8
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 3.5e-66 255.4 151 78.1
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 1.0e-65 253.8 140 81.4
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 8.6e-65 250.8 174 65.5
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 1.2e-63 246.9 143 79.0
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.6e-63 246.5 185 62.2
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 1.4e-62 243.4 180 63.3
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 6.8e-62 241.1 178 62.4
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 8.9e-62 240.7 266 49.2
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 3.4e-61 238.8 157 72.6
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 4.4e-61 238.4 150 72.7
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 3.7e-60 235.3 238 53.4
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 2.3e-57 226.1 191 55.0
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.3e-56 222.2 150 69.3
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 9.5e-56 220.7 133 77.4
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 4.1e-51 205.3 129 71.3
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 7.1e-51 204.5 170 57.6
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 2.1e-50 203.0 153 60.1
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 3.5e-50 202.2 173 54.3
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.3e-49 199.5 150 59.3
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 2.4e-46 189.5 107 77.6
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 6.8e-46 188.0 128 69.5
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.5e-45 186.8 104 77.9
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 1.7e-44 183.3 130 66.9
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 8.4e-44 181.0 116 74.1
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 2.4e-43 179.5 130 65.4
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 2.4e-43 179.5 111 75.7
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.7e-41 173.3 128 60.9
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.1e-38 164.1 224 41.1
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 2.4e-35 152.9 120 54.2
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 9.3e-35 151.0 91 72.5
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 2.1e-34 149.8 132 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 6.0e-34 148.3 161 47.8
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 9.6e-32 141.0 90 66.7
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 2.4e-30 136.3 84 70.2
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 8.4e-28 127.9 184 42.9
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 2.1e-26 123.2 81 69.1
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 1.1e-24 117.5 98 60.2
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 7.6e-21 104.8 183 39.3
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 5.8e-13 78.6 45 77.8


User provided reference genes

Program Settings