Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006047 Carpinus fangiana HOM05D000290 ORTHO05D006676 1.6e-49 199.1 101 100.0
Haze_14294 Corylus avellana HOM05D000290 ORTHO05D006676 1.8e-21 105.9 67 80.6
Cfa007761 Carpinus fangiana HOM05D000290 ORTHO05D006676 1.5e-20 102.8 67 79.1
Aqoxy3G04138_Aqoxy3G04139 Aquilegia oxysepala HOM05D000290 ORTHO05D006676 1.6e-17 92.8 67 65.7
PSO063G2011 Papaver somniferum HOM05D000290 ORTHO05D006676 1.6e-17 92.8 67 68.7
Rhsim10G0183800 Rhododendron simsii HOM05D000290 ORTHO05D006676 2.7e-17 92.0 67 70.1
Manes.01G122600 Manihot esculenta HOM05D000290 ORTHO05D006676 3.6e-17 91.7 67 67.2
Nn4g24663 Nelumbo nucifera HOM05D000290 ORTHO05D006676 4.7e-17 91.3 67 68.7
MD17G1270600 Malus domestica HOM05D000290 ORTHO05D006676 6.1e-17 90.9 67 67.2
TWI74G0971 Tripterygium wilfordii HOM05D000290 ORTHO05D006676 1.0e-16 90.1 67 70.1
Potri.004G075100 Populus trichocarpa HOM05D000290 ORTHO05D006676 2.3e-16 89.0 67 70.1
vmacro20482 Vaccinium macrocarpon HOM05D000290 ORTHO05D006676 2.3e-16 89.0 67 67.2
BcaC08g46093 Brassica carinata HOM05D000290 ORTHO05D006676 3.9e-16 88.2 67 67.2
BraA07t30931Z Brassica rapa HOM05D000290 ORTHO05D006676 3.9e-16 88.2 67 67.2
RcHm_v2.0_Chr3g0490181 Rosa chinensis HOM05D000290 ORTHO05D006676 3.9e-16 88.2 67 64.2
TAR629G2667 Trochodendron aralioides HOM05D000290 ORTHO05D006676 5.1e-16 87.8 67 64.2
Prupe.3G015600 Prunus persica HOM05D000290 ORTHO05D006676 6.7e-16 87.4 67 64.2
GSVIVG01035242001 Vitis vinifera HOM05D000290 ORTHO05D006676 6.7e-16 87.4 57 73.7
Sabra04G0049700 Salix brachista HOM05D000290 ORTHO05D006676 8.8e-16 87.0 67 68.7
Actinidia17170 Actinidia chinensis HOM05D000290 ORTHO05D006676 1.1e-15 86.7 67 67.2
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 1.1e-15 86.7 67 62.7
HanXRQChr09g0259791 Helianthus annuus HOM05D000290 ORTHO05D006676 1.1e-15 86.7 67 64.2
BcaB03g15306 Brassica carinata HOM05D000290 ORTHO05D006676 2.0e-15 85.9 67 64.2
Peaxi162Scf00005g01013 Petunia axillaris HOM05D000290 ORTHO05D006676 2.0e-15 85.9 67 62.7
THA.LOC104822112 Tarenaya hassleriana HOM05D000290 ORTHO05D006676 2.0e-15 85.9 67 65.7
ClCG05G012110 Citrullus lanatus HOM05D000290 ORTHO05D006676 2.6e-15 85.5 78 59.0
SalBow5G1779 Salvia bowleyana HOM05D000290 ORTHO05D006676 2.6e-15 85.5 67 62.7
SalBow5G4017 Salvia bowleyana HOM05D000290 ORTHO05D006676 2.6e-15 85.5 67 62.7
A07p33030 Brassica napus HOM05D000290 ORTHO05D006676 3.3e-15 85.1 67 62.7
C06p39280 Brassica napus HOM05D000290 ORTHO05D006676 3.3e-15 85.1 67 65.7
BolC6t39021H Brassica oleracea HOM05D000290 ORTHO05D006676 3.3e-15 85.1 67 65.7
MELO3C023760.2 Cucumis melo HOM05D000290 ORTHO05D006676 4.4e-15 84.7 78 57.7
AT1G65950 Arabidopsis thaliana HOM05D000290 ORTHO05D006676 5.7e-15 84.3 67 61.2
Duzib138G1691 Durio zibethinus HOM05D000290 ORTHO05D006676 5.7e-15 84.3 79 57.0
Thhalv10018274m.g Eutrema salsugineum HOM05D000290 ORTHO05D006676 5.7e-15 84.3 67 61.2
CDE05G3543 Ceratophyllum demersum HOM05D000290 ORTHO05D006676 7.4e-15 84.0 62 66.1
Sp5g21020 Schrenkiella parvula HOM05D000290 ORTHO05D006676 7.4e-15 84.0 67 61.2
AL2G23430 Arabidopsis lyrata HOM05D000290 ORTHO05D006676 9.7e-15 83.6 67 61.2
MSTRG.3678 Avicennia marina HOM05D000290 ORTHO05D006676 9.7e-15 83.6 67 61.2
CARHR057900 Cardamine hirsuta HOM05D000290 ORTHO05D006676 9.7e-15 83.6 67 61.2
Migut.K01085 Erythranthe guttata HOM05D000290 ORTHO05D006676 9.7e-15 83.6 67 62.7
ECA246G5015 Erigeron canadensis HOM05D000290 ORTHO05D006676 1.3e-14 83.2 67 61.2
Lsat_1_v5_gn_8_112060 Lactuca sativa HOM05D000290 ORTHO05D006676 1.7e-14 82.8 67 62.7
Cc07_g12870 Coffea canephora HOM05D000290 ORTHO05D006676 2.8e-14 82.0 67 59.7
Lj2C513G4 Lonicera japonica HOM05D000290 ORTHO05D006676 2.8e-14 82.0 67 62.7
Thecc.04G000900 Theobroma cacao HOM05D000290 ORTHO05D006676 2.8e-14 82.0 84 53.6
Atru.chr12.1226 Acer truncatum HOM05D000290 ORTHO05D006676 3.7e-14 81.6 67 59.7
Aa31LG2G2760 Aethionema arabicum HOM05D000290 ORTHO05D006676 3.7e-14 81.6 67 61.2
Gohir.A07G169400 Gossypium hirsutum HOM05D000290 ORTHO05D006676 3.7e-14 81.6 79 55.7
Gohir.D07G175800 Gossypium hirsutum HOM05D000290 ORTHO05D006676 3.7e-14 81.6 79 55.7
Gorai.001G196700 Gossypium raimondii HOM05D000290 ORTHO05D006676 3.7e-14 81.6 79 55.7
Cpa.g.sc178.12 Carica papaya HOM05D004515 ORTHO05D006676 4.8e-14 81.3 66 60.6
Ciclev10019576m.g Citrus clementina HOM05D000290 ORTHO05D006676 4.8e-14 81.3 67 62.7
FvH4_1g30310 Fragaria vesca HOM05D000290 ORTHO05D006676 4.8e-14 81.3 67 59.7
FAN19G0545 Fragaria x ananassa HOM05D000290 ORTHO05D006676 4.8e-14 81.3 67 59.7
SGA_v2.0_scaffold45G17125 Striga asiatica HOM05D000290 ORTHO05D006676 4.8e-14 81.3 67 61.2
Nitab4.5_0002351g0020 Nicotiana tabacum HOM05D000290 ORTHO05D006676 6.3e-14 80.9 67 59.7
Nitab4.5_0005469g0010 Nicotiana tabacum HOM05D000290 ORTHO05D006676 6.3e-14 80.9 67 59.7
Oeu009442.1 Olea europaea HOM05D004515 ORTHO05D006676 6.3e-14 80.9 68 60.3
PGR042G1712 Punica granatum HOM05D000290 ORTHO05D006676 6.3e-14 80.9 67 62.7
ATR0598G192 Amborella trichopoda HOM05D000290 ORTHO05D006676 8.2e-14 80.5 84 52.4
CsaV3_3G020320 Cucumis sativus L. HOM05D000290 ORTHO05D006676 8.2e-14 80.5 67 61.2
Carub.0002s1190 Capsella rubella HOM05D000290 ORTHO05D006676 2.4e-13 79.0 67 58.2
CANSAT01G1953 Cannabis sativa HOM05D000290 ORTHO05D006676 7.0e-13 77.4 67 61.2
Sed0027292 Sechium edule HOM05D000290 ORTHO05D006676 9.1e-13 77.0 67 58.2
Dinv28236 Davidia involucrata HOM05D000290 ORTHO05D006676 1.2e-12 76.6 61 67.2
Eucgr.J01643 Eucalyptus grandis HOM05D000290 ORTHO05D006676 1.6e-12 76.3 60 66.7
unitig_32.g11782 Utricularia gibba HOM05D000290 ORTHO05D006676 1.6e-12 76.3 67 56.7
QL02p060375 Quercus lobata HOM05D000290 ORTHO05D006676 4.5e-12 74.7 109 44.0
Sc14g0006520 Simmondsia chinensis HOM05D000290 ORTHO05D006676 1.0e-11 73.6 79 49.4
AUR62018236 Chenopodium quinoa HOM05D000290 ORTHO05D006676 1.3e-11 73.2 79 49.4
Phvul.008G239800 Phaseolus vulgaris HOM05D000290 ORTHO05D006676 1.3e-11 73.2 67 55.2
Solyc04g008300.1 Solanum lycopersicum HOM05D000290 ORTHO05D006676 1.7e-11 72.8 69 59.4
Sopen04g003420 Solanum pennellii HOM05D000290 ORTHO05D006676 1.7e-11 72.8 69 59.4
Os11g0549635 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 2.9e-11 72.0 67 56.7
Os11g0549686 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 2.9e-11 72.0 67 56.7
Glyma.02G241300 Glycine max HOM05D000290 ORTHO05D006676 8.5e-11 70.5 67 55.2
Ca_05767_v3 Cicer arietinum L. HOM05D000290 ORTHO05D006676 1.5e-10 69.7 68 54.4
PGSC0003DMG400029496 Solanum tuberosum HOM05D000290 ORTHO05D006676 1.9e-10 69.3 69 58.0
HPP92_021276 Vanilla planifolia HOM05D002023 ORTHO05D002049 3.2e-10 68.6 67 50.7
arahy.Tifrunner.gnm1.ann1.BI36IT Arachis hypogaea HOM05D000290 ORTHO05D006676 4.2e-10 68.2 68 51.5
VMungo0647G0176 Vigna mungo HOM05D000290 ORTHO05D006676 5.5e-10 67.8 67 50.7
CAN.G966.4 Capsicum annuum HOM05D000290 ORTHO05D006676 7.2e-10 67.4 72 48.6
Hund13061 Selenicereus undatus HOM05D000290 ORTHO05D006676 7.2e-10 67.4 79 45.6
Ah.10g032610 Amaranthus hybridus HOM05D000290 ORTHO05D006676 9.4e-10 67.0 67 53.7
arahy.Tifrunner.gnm1.ann1.NBYX54 Arachis hypogaea HOM05D000290 ORTHO05D006676 9.4e-10 67.0 67 52.2
Pp3c13_6150 Physcomitrium patens HOM05D000290 ORTHO05D006676 9.4e-10 67.0 51 60.8
Psat2g043960 Pisum sativum HOM05D000290 ORTHO05D006676 9.4e-10 67.0 67 52.2
Lalb_Chr04g0251481 Lupinus albus HOM05D000290 ORTHO05D006676 2.1e-09 65.9 67 50.7
LjContig00141g0021713 Lotus japonicus HOM05D000290 ORTHO05D006676 2.7e-09 65.5 67 50.7
HPP92_021291 Vanilla planifolia HOM05D000290 ORTHO05D006676 2.7e-09 65.5 53 58.5
Medtr5g077080 Medicago truncatula HOM05D000290 ORTHO05D006676 8.0e-09 63.9 67 50.7
Migut.A00459 Erythranthe guttata HOM05D003482 ORTHO05D004194 1.4e-08 63.2 67 49.3
TPR.G18905 Trifolium pratense HOM05D000290 ORTHO05D006676 1.4e-08 63.2 67 50.7
HPP92_015798 Vanilla planifolia HOM05D003482 ORTHO05D004194 6.7e-08 60.8 54 55.6
HPP92_015810 Vanilla planifolia HOM05D003482 ORTHO05D004194 6.7e-08 60.8 54 55.6
CAN.G195.3 Capsicum annuum HOM05D003482 ORTHO05D004194 1.1e-07 60.1 62 48.4
Sopen08g022930 Solanum pennellii HOM05D003482 ORTHO05D004194 2.0e-07 59.3 67 46.3
Solyc08g074280.4 Solanum lycopersicum HOM05D003482 ORTHO05D004194 2.6e-07 58.9 67 46.3
Sed0005804 Sechium edule HOM05D003482 ORTHO05D004194 3.3e-07 58.5 67 46.3
Potri.018G003600 Populus trichocarpa HOM05D003482 ORTHO05D004194 4.4e-07 58.2 65 49.2
ECA240G1915 Erigeron canadensis HOM05D003482 ORTHO05D004194 5.7e-07 57.8 67 41.8
Lsat_1_v5_gn_6_15541 Lactuca sativa HOM05D003482 ORTHO05D004194 5.7e-07 57.8 67 43.3
Potri.018G003400 Populus trichocarpa HOM05D003482 ORTHO05D004194 5.7e-07 57.8 77 45.5
Peaxi162Scf00213g01025 Petunia axillaris HOM05D003482 ORTHO05D004194 7.5e-07 57.4 62 48.4
Potri.018G000101 Populus trichocarpa HOM05D003482 ORTHO05D004194 9.7e-07 57.0 69 46.4
ECA233G2479 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.3e-06 56.6 67 43.3
MSTRG.11822 Avicennia marina HOM05D003482 ORTHO05D004194 1.7e-06 56.2 67 44.8
HanXRQChr03g0081371 Helianthus annuus HOM05D003482 ORTHO05D004194 1.7e-06 56.2 67 43.3
ClCG11G013930 Citrullus lanatus HOM05D003482 ORTHO05D004194 2.2e-06 55.8 67 43.3
Mapoly0097s0048 Marchantia polymorpha HOM05D000290 ORTHO05D006676 2.2e-06 55.8 69 40.6
HanXRQChr13g0411821 Helianthus annuus HOM05D003482 ORTHO05D004194 2.8e-06 55.5 70 42.9
Pp3c16_18060 Physcomitrium patens HOM05D003482 ORTHO05D004194 2.8e-06 55.5 54 50.0
CDE05G0655 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 3.7e-06 55.1 67 41.8
SalBow4G3081 Salvia bowleyana HOM05D003482 ORTHO05D004194 3.7e-06 55.1 67 43.3
Sopen01g030570 Solanum pennellii HOM05D005784 ORTHO05D007803 3.7e-06 55.1 46 58.7
TWI32G0788 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 3.7e-06 55.1 67 44.8
FAN20G1504 Fragaria x ananassa HOM05D003482 ORTHO05D004194 4.8e-06 54.7 67 43.3
Sabra18G0002200 Salix brachista HOM05D003482 ORTHO05D004194 4.8e-06 54.7 77 42.9
Sabra18G0009100 Salix brachista HOM05D003482 ORTHO05D004194 4.8e-06 54.7 77 42.9
HPP92_016969 Vanilla planifolia HOM05D005784 ORTHO05D007803 4.8e-06 54.7 64 46.9
HPP92_017034 Vanilla planifolia HOM05D005784 ORTHO05D007803 4.8e-06 54.7 64 46.9
SEGI_28596 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 6.3e-06 54.3 67 44.8
Solyc01g068640.3 Solanum lycopersicum HOM05D005784 ORTHO05D007803 6.3e-06 54.3 46 60.9
Zm00001eb272880 Zea mays HOM05D003482 ORTHO05D004194 6.3e-06 54.3 67 41.8
MELO3C003597.2 Cucumis melo HOM05D003482 ORTHO05D004194 8.2e-06 53.9 67 41.8
SMO365G0022 Selaginella moellendorffii HOM05D000290 ORTHO05D006676 8.2e-06 53.9 79 36.7
THA.LOC104814963 Tarenaya hassleriana HOM05D003482 ORTHO05D004194 8.2e-06 53.9 62 43.5


User provided reference genes

Program Settings