Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 2.7e-39 164.9 83 100.0
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 5.1e-30 134.0 112 67.9
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 3.3e-29 131.3 81 81.5
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 7.4e-29 130.2 81 77.8
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 1.3e-28 129.4 81 75.3
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 1.4e-27 125.9 81 74.1
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 1.4e-27 125.9 80 71.2
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 7.0e-27 123.6 81 72.8
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 7.0e-27 123.6 81 72.8
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 1.6e-26 122.5 80 72.5
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 4.5e-26 120.9 81 70.4
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 5.9e-26 120.6 81 72.8
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 7.7e-26 120.2 79 74.7
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 1.7e-25 119.0 77 76.6
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 2.2e-25 118.6 81 69.1
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 2.9e-25 118.2 80 67.5
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 2.9e-25 118.2 81 70.4
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 2.9e-25 118.2 81 71.6
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 3.8e-25 117.9 81 69.1
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 5.0e-25 117.5 78 70.5
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 5.0e-25 117.5 81 70.4
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 8.5e-25 116.7 73 76.7
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 8.5e-25 116.7 72 76.4
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 1.5e-24 115.9 81 69.1
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 3.2e-24 114.8 70 78.6
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 4.2e-24 114.4 79 69.6
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 4.2e-24 114.4 81 65.4
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 9.4e-24 113.2 79 70.9
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 4.7e-23 110.9 71 73.2
Sed0025850 Sechium edule HOM05D007654 ORTHO05D009697 4.7e-23 110.9 77 67.5
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 6.1e-23 110.5 77 67.5
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 6.1e-23 110.5 81 67.9
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 8.0e-23 110.2 69 78.3
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 8.0e-23 110.2 79 65.8
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 8.0e-23 110.2 83 67.5
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 1.0e-22 109.8 78 66.7
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 1.0e-22 109.8 75 66.7
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 1.0e-22 109.8 81 64.2
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 1.0e-22 109.8 81 67.9
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 1.0e-22 109.8 80 70.0
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 1.4e-22 109.4 81 69.1
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 1.8e-22 109.0 79 64.6
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 2.3e-22 108.6 78 65.4
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 2.3e-22 108.6 69 73.9
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 2.3e-22 108.6 69 75.4
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 2.3e-22 108.6 81 61.7
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 3.0e-22 108.2 69 72.5
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 8.8e-22 106.7 75 66.7
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 1.5e-21 105.9 79 63.3
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 1.5e-21 105.9 79 63.3
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 1.5e-21 105.9 81 60.5
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 1.5e-21 105.9 81 60.5
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 2.0e-21 105.5 81 59.3
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 2.0e-21 105.5 78 62.8
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 2.0e-21 105.5 69 73.9
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 2.0e-21 105.5 80 62.5
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 2.0e-21 105.5 80 65.0
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 2.6e-21 105.1 78 61.5
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 3.3e-21 104.8 78 64.1
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 5.7e-21 104.0 79 62.0
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 7.5e-21 103.6 67 77.6
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 9.7e-21 103.2 81 63.0
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 9.7e-21 103.2 69 72.5
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 9.7e-21 103.2 69 71.0
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 9.7e-21 103.2 80 66.2
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 1.3e-20 102.8 78 60.3
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 1.7e-20 102.4 79 60.8
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 1.7e-20 102.4 74 66.2
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 2.2e-20 102.1 81 59.3
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 4.8e-20 100.9 79 58.2
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 6.3e-20 100.5 81 56.8
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 8.2e-20 100.1 80 61.2
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 4.1e-19 97.8 61 77.0
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 9.1e-19 96.7 69 71.0
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 2.7e-18 95.1 79 55.7
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 7.7e-18 93.6 68 64.7
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 7.7e-18 93.6 68 64.7
Dinv19737 Davidia involucrata HOM05D007654 ORTHO05D009697 1.0e-17 93.2 55 80.0
FvH4_2g24970 Fragaria vesca HOM05D007654 ORTHO05D009697 1.3e-17 92.8 61 72.1
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 1.3e-17 92.8 64 65.6
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 2.2e-17 92.0 69 62.3
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 3.8e-17 91.3 76 60.5
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 5.0e-17 90.9 77 55.8
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 1.9e-16 89.0 70 62.9
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 3.2e-16 88.2 73 61.6
FAN20G1580 Fragaria x ananassa HOM05D007654 ORTHO05D009697 1.2e-15 86.3 64 68.8
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 1.6e-15 85.9 78 53.8
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 1.6e-15 85.9 78 53.8
Sabra14G0099700 Salix brachista HOM05D000091 ORTHO05D003679 1.6e-15 85.9 62 66.1
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 2.1e-15 85.5 72 63.9
Nitab4.5_0001102g0070 Nicotiana tabacum HOM05D007654 ORTHO05D009697 3.6e-15 84.7 58 70.7
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 8.0e-15 83.6 50 78.0
AUR62008575 Chenopodium quinoa HOM05D000096 ORTHO05D000045 1.4e-14 82.8 64 65.6
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 3.0e-14 81.6 64 62.5
vmacro14982 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 2.0e-13 79.0 48 75.0
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 4.4e-13 77.8 71 56.3
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 1.3e-12 76.3 51 64.7
Lsat_1_v5_gn_0_9401 Lactuca sativa HOM05D007654 ORTHO05D009697 1.4e-11 72.8 57 61.4
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 1.0e-09 66.6 46 58.7
AagrBONN_evm.TU.Sc2ySwM_344.4968 Anthoceros agrestis HOM05D007654 ORTHO05D009697 4.7e-07 57.8 47 51.1
Mapoly0101s0010 Marchantia polymorpha HOM05D007654 ORTHO05D009697 1.0e-06 56.6 53 50.9


User provided reference genes

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