Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 2.0e-197 692.2 337 100.0
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 1.2e-154 550.1 339 78.5
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 1.8e-142 509.6 344 73.5
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 2.7e-138 495.7 338 71.9
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 7.4e-136 487.6 344 69.5
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 1.4e-134 483.4 337 70.0
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.8e-134 483.0 340 70.3
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.8e-134 483.0 353 68.6
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 2.9e-132 475.7 338 71.6
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 8.5e-132 474.2 336 69.0
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 3.6e-130 468.8 344 67.2
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 1.0e-129 467.2 345 65.2
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 4.0e-129 465.3 338 69.5
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 2.0e-128 463.0 338 66.6
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.6e-128 462.6 338 66.6
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 2.6e-128 462.6 340 67.9
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 3.4e-128 462.2 339 67.0
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 1.7e-127 459.9 346 66.2
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 3.7e-127 458.8 345 66.7
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 3.7e-127 458.8 344 67.4
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 4.8e-127 458.4 343 65.3
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 8.3e-127 457.6 338 66.3
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.1e-126 457.2 338 66.0
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.4e-126 456.8 341 66.3
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 3.1e-126 455.7 347 66.6
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 4.1e-126 455.3 337 64.1
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 5.4e-126 454.9 341 66.6
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 5.4e-126 454.9 347 65.7
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 9.1e-126 454.1 341 67.2
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 2.0e-125 453.0 337 65.0
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 2.7e-125 452.6 341 65.7
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 4.5e-125 451.8 337 65.6
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 5.9e-125 451.4 341 66.3
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 7.7e-125 451.1 338 64.5
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 1.0e-124 450.7 338 65.1
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.7e-124 449.9 344 64.5
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 2.2e-124 449.5 346 64.7
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 3.8e-124 448.7 333 65.8
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 4.2e-123 445.3 340 64.7
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 4.2e-123 445.3 338 64.5
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 5.5e-123 444.9 342 63.7
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 1.2e-122 443.7 324 67.9
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.2e-122 443.7 346 64.7
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.7e-122 442.6 344 64.0
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 2.7e-122 442.6 349 63.6
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 4.7e-122 441.8 337 64.7
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 6.1e-122 441.4 350 60.9
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 8.0e-122 441.0 342 62.9
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.0e-121 440.7 336 63.7
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 1.8e-121 439.9 337 65.6
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 6.8e-121 438.0 344 63.7
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 2.0e-120 436.4 347 61.4
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 9.8e-120 434.1 343 62.4
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 9.8e-120 434.1 340 62.9
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 1.7e-119 433.3 340 61.5
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 2.8e-119 432.6 322 67.1
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 3.7e-119 432.2 343 62.1
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 6.3e-119 431.4 343 61.5
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 5.4e-118 428.3 337 63.5
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 4.5e-117 425.2 344 61.0
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.3e-116 423.7 361 59.6
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 1.5e-115 420.2 337 60.2
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 1.9e-115 419.9 348 59.5
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 4.2e-115 418.7 362 58.8
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 7.2e-115 417.9 359 59.3
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 2.1e-114 416.4 340 59.7
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 8.0e-114 414.5 340 58.8
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 1.8e-113 413.3 337 59.9
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 8.9e-113 411.0 339 58.4
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 1.5e-112 410.2 338 60.1
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 4.4e-112 408.7 344 58.4
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 5.7e-112 408.3 357 59.1
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 2.2e-111 406.4 352 58.5
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 1.8e-110 403.3 354 58.8
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 1.6e-109 400.2 332 59.6
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.0e-108 397.5 218 90.4
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.0e-108 397.5 328 61.3
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.3e-108 397.1 332 61.7
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 8.6e-108 394.4 353 56.1
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 8.6e-108 394.4 332 58.7
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 2.5e-107 392.9 322 63.7
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 5.6e-107 391.7 368 55.4
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 1.2e-106 390.6 332 61.4
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 3.6e-106 389.0 332 57.8
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 1.4e-105 387.1 338 60.4
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 6.8e-105 384.8 336 57.1
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 1.3e-103 380.6 207 91.3
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 1.7e-103 380.2 332 58.4
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.7e-103 379.0 300 62.7
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 4.9e-103 378.6 332 59.0
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 2.3e-100 369.8 334 56.6
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 1.5e-99 367.1 404 49.0
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 1.2e-98 364.0 426 47.7
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 1.2e-98 364.0 397 50.4
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 1.6e-98 363.6 388 50.0
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 3.6e-98 362.5 404 49.0
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 1.1e-97 360.9 334 55.4
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 5.2e-97 358.6 283 64.3
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 6.8e-97 358.2 332 55.7
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 6.8e-97 358.2 332 55.7
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 3.4e-96 355.9 334 53.0
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 4.4e-96 355.5 289 61.2
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 5.8e-96 355.1 414 47.6
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 8.3e-95 351.3 338 55.9
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 8.3e-95 351.3 329 52.6
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 1.9e-94 350.1 338 51.8
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 2.3e-92 343.2 308 57.5
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.1e-91 340.9 302 58.9
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 1.8e-89 333.6 334 52.1
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.3e-84 317.4 277 58.5
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 6.8e-81 305.1 339 48.7
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 4.4e-80 302.4 333 47.4
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 2.2e-79 300.1 366 43.2
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 7.1e-78 295.0 264 56.8
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 3.3e-75 286.2 499 35.3
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 4.3e-75 285.8 422 38.6
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 1.3e-74 284.3 335 48.4
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 4.8e-74 282.3 358 44.7
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 1.4e-73 280.8 401 39.4
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 4.0e-73 279.3 176 74.4
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 1.3e-71 274.2 332 44.6
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 2.9e-71 273.1 334 44.6
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 1.1e-70 271.2 337 43.9
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.3e-68 264.2 422 36.7
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.1e-66 256.9 342 44.7
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 2.4e-65 253.4 342 44.4
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 5.8e-64 248.8 337 41.8
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 6.4e-63 245.4 330 40.0
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 6.9e-57 225.3 415 35.9
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 7.6e-48 195.3 193 54.4
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 4.8e-42 176.0 98 77.6
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 5.5e-30 136.0 164 45.7
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 4.1e-25 119.8 121 51.2
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 9.1e-25 118.6 166 41.0
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 1.0e-23 115.2 265 30.6
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 1.8e-09 67.8 84 44.0
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 4.1e-09 66.6 121 32.2
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 2.0e-08 64.3 126 36.5
Lalb_Chr21g0318461 Lupinus albus HOM05D002394 ORTHO05D002508 2.7e-08 63.9 141 35.5
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 3.5e-08 63.5 56 62.5
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 5.9e-08 62.8 336 23.2
arahy.Tifrunner.gnm1.ann1.56XWA4 Arachis hypogaea HOM05D002394 ORTHO05D002508 1.0e-07 62.0 123 35.0
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 1.3e-07 61.6 329 22.8
Sc10g0003270 Simmondsia chinensis HOM05D002394 ORTHO05D002508 1.7e-07 61.2 124 33.9
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 2.2e-07 60.8 125 36.0
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 3.8e-07 60.1 124 34.7
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 3.8e-07 60.1 125 35.2
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 3.8e-07 60.1 125 35.2
Hma1.2p1_3742F.1_g337440 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 3.8e-07 60.1 125 34.4
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 6.5e-07 59.3 125 34.4
BcaB01g05056 Brassica carinata HOM05D002394 ORTHO05D002508 6.5e-07 59.3 334 23.1
A03p07140 Brassica napus HOM05D002394 ORTHO05D002508 6.5e-07 59.3 335 23.3
C03p08130 Brassica napus HOM05D002394 ORTHO05D002508 6.5e-07 59.3 334 23.1
BolC3t13310H Brassica oleracea HOM05D002394 ORTHO05D002508 6.5e-07 59.3 334 23.1
BraA03t10036Z Brassica rapa HOM05D002394 ORTHO05D002508 6.5e-07 59.3 335 23.3
TWI34G1813 Tripterygium wilfordii HOM05D002394 ORTHO05D002508 6.5e-07 59.3 126 36.5
EL10Ac2g03083 Beta vulgaris HOM05D002394 ORTHO05D002508 8.5e-07 58.9 126 34.1
CDE10G0416 Ceratophyllum demersum HOM05D002394 ORTHO05D002508 1.1e-06 58.5 124 32.3
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 1.1e-06 58.5 125 34.4
Hma1.2p1_1741F.1_g300110 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 1.5e-06 58.2 125 33.6
PGR119G0593 Punica granatum HOM05D002394 ORTHO05D002508 1.5e-06 58.2 124 29.0
Zm00001eb326680 Zea mays HOM05D002394 ORTHO05D002508 1.5e-06 58.2 123 35.0
Hma1.2p1_0221F.1_g093090 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 1.9e-06 57.8 125 33.6
Nitab4.5_0008213g0030 Nicotiana tabacum HOM05D002394 ORTHO05D002508 1.9e-06 57.8 127 34.6
BcaB01g05054 Brassica carinata HOM05D002394 ORTHO05D002508 2.5e-06 57.4 124 34.7
CARHR263030 Cardamine hirsuta HOM05D002394 ORTHO05D002508 2.5e-06 57.4 127 35.4
Thhalv10027898m.g Eutrema salsugineum HOM05D002394 ORTHO05D002508 2.5e-06 57.4 127 35.4
Phvul.004G033800 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 3.2e-06 57.0 138 32.6
Sp7g02610 Schrenkiella parvula HOM05D002394 ORTHO05D002508 9.5e-06 55.5 127 35.4


User provided reference genes

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