Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 3.4e-45 184.5 85 100.0
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 4.4e-45 184.1 85 98.8
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.0e-41 172.9 83 92.8
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.5e-40 168.3 83 90.4
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 3.3e-40 167.9 83 89.2
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 5.6e-40 167.2 83 89.2
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 5.6e-40 167.2 83 89.2
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 7.3e-40 166.8 83 90.4
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 7.3e-40 166.8 83 90.4
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 7.3e-40 166.8 83 89.2
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 9.6e-40 166.4 83 90.4
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 9.6e-40 166.4 83 94.0
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 9.6e-40 166.4 84 88.1
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 9.6e-40 166.4 83 89.2
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.6e-39 165.6 83 89.2
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.6e-39 165.6 83 89.2
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.1e-39 165.2 83 89.2
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 6.2e-39 163.7 83 89.2
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 6.2e-39 163.7 85 89.4
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 6.2e-39 163.7 84 92.9
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 8.1e-39 163.3 82 91.5
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-38 162.9 83 88.0
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-38 162.9 83 88.0
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-38 162.9 83 88.0
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-38 162.9 83 88.0
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 1.1e-38 162.9 83 88.0
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 1.1e-38 162.9 83 88.0
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.1e-38 162.9 85 89.4
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 1.4e-38 162.5 83 88.0
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 1.4e-38 162.5 83 88.0
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 1.4e-38 162.5 83 88.0
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.4e-38 162.5 84 89.3
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.4e-38 162.5 84 89.3
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 1.4e-38 162.5 84 91.7
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-38 162.2 84 91.7
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-38 162.2 84 91.7
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.8e-38 162.2 84 91.7
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.4e-38 161.8 85 88.2
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 3.1e-38 161.4 85 87.1
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 3.1e-38 161.4 82 90.2
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 3.1e-38 161.4 85 89.4
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 4.0e-38 161.0 84 90.5
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.0e-38 161.0 84 88.1
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 6.9e-38 160.2 85 84.7
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 6.9e-38 160.2 83 86.7
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 6.9e-38 160.2 83 86.7
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 6.9e-38 160.2 83 86.7
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.9e-38 160.2 84 90.5
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.9e-38 160.2 84 90.5
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 6.9e-38 160.2 84 90.5
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 9.0e-38 159.8 83 86.7
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.2e-37 159.5 83 89.2
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 1.2e-37 159.5 85 87.1
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 1.5e-37 159.1 83 85.5
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 1.5e-37 159.1 77 92.2
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 3.4e-37 157.9 83 85.5
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 3.4e-37 157.9 83 86.7
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 4.5e-37 157.5 83 86.7
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 4.5e-37 157.5 85 87.1
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 5.8e-37 157.1 83 85.5
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 5.8e-37 157.1 83 91.6
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.8e-37 157.1 82 86.6
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 7.6e-37 156.8 85 85.9
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 7.6e-37 156.8 83 88.0
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 7.6e-37 156.8 85 85.9
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 9.9e-37 156.4 86 83.7
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 9.9e-37 156.4 86 82.6
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 9.9e-37 156.4 83 85.5
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 9.9e-37 156.4 83 90.4
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 9.9e-37 156.4 83 90.4
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 9.9e-37 156.4 83 90.4
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 9.9e-37 156.4 83 90.4
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 9.9e-37 156.4 83 84.3
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 1.3e-36 156.0 83 86.7
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 1.3e-36 156.0 84 85.7
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.3e-36 156.0 83 86.7
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.3e-36 156.0 86 84.9
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.3e-36 156.0 82 86.6
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.3e-36 156.0 86 84.9
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.7e-36 155.6 84 84.5
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 1.7e-36 155.6 82 86.6
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 2.2e-36 155.2 74 94.6
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 2.2e-36 155.2 84 85.7
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 2.2e-36 155.2 83 88.0
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 2.2e-36 155.2 85 82.4
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 2.9e-36 154.8 83 86.7
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 2.9e-36 154.8 85 84.7
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 2.9e-36 154.8 85 84.7
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 3.8e-36 154.5 83 86.7
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 3.8e-36 154.5 83 86.7
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 3.8e-36 154.5 83 86.7
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 3.8e-36 154.5 84 84.5
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 3.8e-36 154.5 85 84.7
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 3.8e-36 154.5 85 85.9
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 4.9e-36 154.1 85 82.4
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 4.9e-36 154.1 85 81.2
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 6.4e-36 153.7 83 85.5
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 8.4e-36 153.3 85 83.5
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 84.5
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 1.4e-35 152.5 83 84.3
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.9e-35 152.1 102 70.6
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.9e-35 152.1 85 83.5
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 2.4e-35 151.8 76 89.5
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 86.7
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 2.4e-35 151.8 85 82.4
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 2.4e-35 151.8 85 82.4
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 3.2e-35 151.4 86 81.4
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 4.2e-35 151.0 82 82.9
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 5.4e-35 150.6 85 81.2
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 5.4e-35 150.6 83 83.1
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 7.1e-35 150.2 86 81.4
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.2e-34 149.4 78 85.9
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.6e-34 149.1 84 81.0
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 71 91.5
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 7.9e-34 146.7 105 70.5
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 6.7e-33 143.7 77 84.4
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.9e-32 142.1 83 77.1
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.1e-31 138.7 65 92.3
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 6.2e-31 137.1 78 83.3
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 6.2e-31 137.1 63 95.2
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.4e-30 136.0 75 80.0
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 1.8e-30 135.6 110 63.6
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 93.5
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 4.0e-30 134.4 62 93.5
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 9.0e-30 133.3 61 93.4
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 1.2e-29 132.9 61 93.4
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 5.8e-29 130.6 60 91.7
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 2.4e-27 125.2 57 93.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.5e-24 115.2 76 69.7
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 9.6e-24 113.2 50 94.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 9.6e-24 113.2 50 94.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 1.6e-23 112.5 50 94.0
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.1e-23 112.1 61 88.5
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 6.2e-23 110.5 50 92.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 4.0e-22 107.8 49 91.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.2e-20 102.1 85 58.8
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 2.9e-20 101.7 77 61.0
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.4e-19 99.4 85 56.5
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.2e-18 96.3 64 62.5
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.1e-18 95.5 83 53.0
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 1.2e-13 79.7 83 48.2
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.2e-07 58.9 29 86.2
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 1.8e-06 55.8 23 91.3


User provided reference genes

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