Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 2.1e-310 1068.1 540 100.0
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 7.5e-255 883.6 582 82.3
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 9.1e-253 876.7 547 82.1
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 2.7e-252 875.2 546 82.6
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 6.1e-249 864.0 549 80.7
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 8.0e-249 863.6 549 81.1
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 4.1e-245 851.3 550 78.5
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 2.9e-243 845.1 548 80.3
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 8.6e-243 843.6 544 78.9
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 2.8e-241 838.6 534 79.4
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 5.2e-240 834.3 547 77.9
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 2.0e-239 832.4 546 78.8
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 5.7e-239 830.9 536 79.9
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.7e-238 829.3 548 78.3
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.9e-238 828.6 540 78.5
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 3.7e-238 828.2 543 78.8
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 7.0e-237 823.9 602 73.4
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 8.6e-235 817.0 545 76.9
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 1.1e-234 816.6 537 77.8
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.1e-234 816.6 549 76.0
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 1.1e-234 816.6 534 77.7
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 5.6e-234 814.3 534 76.6
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.2e-233 813.1 540 76.9
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.6e-233 812.8 549 76.9
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 2.1e-233 812.4 545 75.4
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.8e-233 812.0 546 76.0
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 3.6e-233 811.6 551 76.4
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 2.3e-232 808.9 540 76.3
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 5.2e-232 807.7 549 76.7
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 8.9e-232 807.0 548 76.3
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 3.4e-231 805.1 534 77.2
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 3.4e-231 805.1 536 77.1
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 5.8e-231 804.3 534 76.4
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 7.5e-231 803.9 538 77.0
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 9.8e-231 803.5 545 76.3
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.3e-230 803.1 540 75.6
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 4.9e-230 801.2 578 72.3
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.1e-229 800.0 538 77.0
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 1.9e-229 799.3 551 75.7
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 1.9e-229 799.3 547 76.6
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 4.1e-229 798.1 547 76.4
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 4.1e-229 798.1 531 76.3
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.4e-229 797.7 536 76.1
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.4e-229 797.7 550 75.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.6e-228 796.2 540 75.7
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 2.0e-228 795.8 537 76.0
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 6.0e-228 794.3 531 75.9
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 8.6e-227 790.4 532 76.1
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.1e-225 785.8 541 74.1
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 6.2e-225 784.3 523 75.1
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 4.0e-224 781.6 527 74.6
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 5.2e-224 781.2 532 76.5
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.8e-224 780.8 546 74.4
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 9.9e-223 776.9 531 75.0
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 4.9e-222 774.6 538 75.3
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.2e-221 771.9 562 71.7
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 4.1e-221 771.5 561 69.9
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 6.0e-220 767.7 525 75.4
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 8.6e-219 763.8 530 75.3
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 9.5e-218 760.4 538 71.4
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 9.5e-218 760.4 536 71.6
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.2e-217 760.0 548 71.7
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 6.2e-217 757.7 531 73.3
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.5e-215 753.1 494 77.7
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 2.6e-215 752.3 534 73.4
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 3.4e-215 751.9 533 73.4
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 4.4e-215 751.5 531 72.7
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.8e-214 748.4 534 72.7
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 4.9e-214 748.0 553 69.8
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.1e-213 745.0 493 76.3
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 2.7e-212 742.3 527 72.5
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 6.0e-212 741.1 549 68.9
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 6.0e-212 741.1 526 71.1
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 7.8e-212 740.7 551 69.0
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 1.7e-211 739.6 549 68.7
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 2.3e-211 739.2 550 69.1
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 2.3e-211 739.2 550 69.1
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 3.9e-211 738.4 541 70.8
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 8.6e-211 737.3 548 69.0
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.6e-209 733.0 550 68.4
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.6e-209 733.0 550 68.4
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 4.0e-208 728.4 530 70.0
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 1.5e-207 726.5 549 67.8
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 9.9e-207 723.8 492 77.2
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.7e-206 723.0 523 71.7
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 4.2e-205 718.4 526 70.9
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.6e-204 716.5 481 76.3
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 2.7e-204 715.7 545 68.3
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 6.0e-204 714.5 520 70.0
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 7.8e-204 714.1 550 68.0
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 8.7e-203 710.7 494 73.3
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 5.6e-202 708.0 532 68.8
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 5.4e-197 691.4 537 68.3
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 3.5e-188 662.1 555 63.6
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 3.9e-187 658.7 549 63.4
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.5e-183 646.7 415 80.2
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.1e-176 624.0 498 67.1
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.3e-171 607.1 411 75.9
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 7.7e-167 591.3 412 71.4
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 2.3e-131 473.4 546 52.0
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 4.9e-129 465.7 360 71.1
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.4e-128 462.2 556 49.8
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 4.3e-125 452.6 295 77.6
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.1e-115 421.4 551 42.8
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 3.4e-114 416.4 528 45.6
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 7.5e-114 415.2 302 71.9
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 4.9e-113 412.5 543 42.7
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.5e-109 400.2 277 73.6
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.4e-106 389.8 561 41.5
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 7.8e-103 378.6 269 73.2
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 3.6e-100 369.8 322 61.2
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 5.8e-98 362.5 542 38.9
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 6.2e-84 315.8 426 44.4
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.0e-78 297.0 181 80.1
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 8.7e-78 295.4 317 55.2
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 3.8e-73 280.0 624 31.6
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.8e-60 236.5 225 58.7
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.0e-57 226.5 283 50.5
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 9.4e-56 222.2 162 71.0
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 3.6e-55 220.3 152 72.4
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 1.3e-49 201.8 705 27.4
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.2e-49 201.1 121 80.2
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 1.0e-46 192.2 174 57.5
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.9e-42 176.4 118 73.7
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 5.5e-40 169.9 115 73.0
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.7e-39 166.8 126 67.5
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.1e-31 141.4 97 70.1
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.0e-25 122.5 179 40.2
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 6.5e-25 119.8 77 80.5
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.5e-21 106.3 99 57.6
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 9.1e-19 99.4 121 48.8
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 3.3e-16 90.9 51 88.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 7.0e-11 73.2 162 30.9
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 9.5e-08 62.8 52 67.3
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 3.6e-07 60.8 187 30.5
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 3.1e-06 57.8 423 22.9
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 8.9e-06 56.2 40 72.5


User provided reference genes

Program Settings