Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 6.9e-184 647.1 317 100.0
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 3.6e-172 608.2 317 95.3
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 4.5e-143 511.5 354 73.4
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 4.7e-140 501.5 321 77.6
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.0e-139 500.4 320 77.2
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 3.0e-139 498.8 320 76.9
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 3.0e-139 498.8 320 76.9
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 2.0e-138 496.1 322 74.5
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 2.0e-138 496.1 322 75.5
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 2.4e-136 489.2 333 73.9
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 3.1e-136 488.8 321 74.8
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 5.4e-136 488.0 321 74.8
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 1.3e-134 483.4 320 74.7
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 1.5e-133 479.9 315 73.7
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 1.2e-132 476.9 316 71.2
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 1.6e-132 476.5 319 73.4
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 2.8e-132 475.7 318 72.3
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 3.7e-129 465.3 315 74.0
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 8.6e-126 454.1 361 64.8
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 8.6e-126 454.1 316 71.5
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 6.8e-123 444.5 319 72.1
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 1.2e-122 443.7 325 69.8
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 9.8e-122 440.7 257 83.3
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 6.4e-121 438.0 313 70.0
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 7.0e-120 434.5 357 62.7
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 4.6e-119 431.8 316 67.1
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 6.0e-119 431.4 303 68.0
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 6.2e-116 421.4 316 65.8
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 8.1e-116 421.0 316 65.8
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 5.8e-114 414.8 316 64.9
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 7.5e-114 414.5 320 64.7
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 4.9e-113 411.8 319 62.7
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 1.4e-112 410.2 327 65.1
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 2.7e-111 406.0 291 67.7
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 4.6e-111 405.2 310 64.5
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 4.6e-111 405.2 291 67.7
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 1.3e-110 403.7 321 64.2
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 1.7e-110 403.3 315 63.2
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 8.1e-108 394.4 310 63.2
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 1.1e-107 394.0 302 64.2
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 4.0e-107 392.1 316 61.4
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 6.8e-107 391.3 323 61.9
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 9.9e-106 387.5 298 66.1
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 2.4e-104 382.9 309 60.8
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 7.1e-104 381.3 309 60.8
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 4.6e-103 378.6 301 62.1
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 1.1e-101 374.0 301 61.1
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 1.5e-101 373.6 315 60.3
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 7.3e-101 371.3 257 70.4
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 3.1e-99 365.9 314 59.9
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 6.9e-99 364.8 290 59.7
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 4.4e-98 362.1 313 56.5
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 9.9e-98 360.9 319 54.9
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 3.8e-97 359.0 311 56.3
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 4.9e-97 358.6 287 60.3
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 6.4e-97 358.2 239 71.1
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 6.4e-97 358.2 291 59.8
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 8.4e-97 357.8 313 56.2
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 1.4e-96 357.1 300 57.7
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 4.2e-96 355.5 281 60.9
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 4.2e-96 355.5 323 54.8
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 4.2e-96 355.5 306 57.8
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 1.2e-95 354.0 356 52.5
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 1.2e-95 354.0 257 61.5
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 7.8e-95 351.3 311 55.9
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 7.8e-95 351.3 315 56.2
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 1.0e-94 350.9 313 54.3
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 1.0e-94 350.9 301 57.8
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 1.0e-94 350.9 304 57.9
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 1.3e-94 350.5 311 54.7
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 1.3e-94 350.5 312 55.1
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 5.1e-94 348.6 365 51.0
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 9.6e-93 344.4 312 54.5
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 1.6e-92 343.6 322 54.7
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 2.8e-92 342.8 259 64.9
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 1.1e-91 340.9 323 53.9
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 1.8e-91 340.1 324 53.7
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 4.0e-91 339.0 343 54.2
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 1.2e-90 337.4 314 53.2
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 1.5e-90 337.0 322 53.7
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 1.5e-90 337.0 322 53.7
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 1.5e-90 337.0 300 57.7
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 3.4e-90 335.9 296 57.1
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 5.8e-90 335.1 295 57.3
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 3.8e-89 332.4 210 73.3
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 7.1e-88 328.2 283 57.6
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 9.3e-88 327.8 232 65.1
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 1.2e-87 327.4 261 61.7
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 4.6e-87 325.5 294 55.1
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 1.5e-85 320.5 310 52.9
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 1.8e-83 313.5 301 51.5
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 3.1e-83 312.8 289 53.6
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 2.4e-75 286.6 268 54.9
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 4.5e-74 282.3 225 61.8
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 3.2e-72 276.2 314 45.5
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 8.2e-68 261.5 289 47.4
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 5.0e-57 225.7 158 74.1
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 9.7e-45 184.9 154 60.4
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 1.0e-41 174.9 322 36.3
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 1.9e-40 170.6 134 59.0
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 6.7e-38 162.2 124 62.9
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 8.8e-38 161.8 127 58.3
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 1.6e-31 141.0 236 34.3
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 8.0e-31 138.7 116 57.8
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 1.5e-29 134.4 86 72.1
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 4.4e-29 132.9 86 70.9
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 1.7e-28 131.0 257 34.6
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 2.4e-27 127.1 86 68.6
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 1.0e-22 111.7 141 41.8
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 8.6e-17 92.0 58 72.4
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 2.3e-14 84.0 102 45.1
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 1.5e-13 81.3 64 60.9
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 4.4e-13 79.7 53 67.9
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 1.5e-08 64.7 245 27.3
Atru.chr9.1259 Acer truncatum HOM05D000593 ORTHO05D002268 1.6e-07 61.2 38 78.9
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 1.6e-07 61.2 193 26.9
Atru.chr3.1390 Acer truncatum HOM05D000593 ORTHO05D000562 3.6e-07 60.1 38 76.3
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 2.3e-06 57.4 125 25.6
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 2.3e-06 57.4 206 26.7
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 5.2e-06 56.2 275 24.4
Cre01.g055469 Chlamydomonas reinhardtii HOM05D006737 ORTHO05D008418 8.9e-06 55.5 102 29.4


User provided reference genes

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