Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 4.2e-72 274.6 142 100.0
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 1.0e-65 253.4 141 90.1
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 9.3e-64 246.9 142 88.0
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 1.6e-63 246.1 142 86.6
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.6e-63 246.1 142 87.3
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.6e-63 246.1 142 87.3
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.1e-63 245.7 142 87.3
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.1e-61 240.0 136 88.2
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.5e-61 238.8 142 87.3
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 2.1e-60 235.7 142 82.4
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 3.7e-60 235.0 142 85.2
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 3.7e-60 235.0 143 86.0
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 3.7e-60 235.0 142 85.2
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 6.3e-60 234.2 142 82.4
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 8.2e-60 233.8 142 83.8
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 1.4e-59 233.0 142 85.2
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 2.4e-59 232.3 142 83.1
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 5.3e-59 231.1 144 81.9
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 9.0e-59 230.3 142 83.1
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 3.4e-58 228.4 166 72.3
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 2.9e-57 225.3 133 86.5
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 5.0e-57 224.6 154 76.6
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 5.0e-57 224.6 142 83.8
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 1.1e-56 223.4 142 80.3
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 5.5e-56 221.1 142 81.0
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 5.5e-56 221.1 163 73.0
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 7.2e-56 220.7 142 79.6
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 9.3e-56 220.3 144 79.9
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 9.3e-56 220.3 144 79.9
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 1.2e-55 219.9 142 80.3
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.6e-55 219.5 142 81.7
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.1e-55 219.2 142 81.0
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 2.7e-55 218.8 142 81.7
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 7.9e-55 217.2 142 82.4
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 1.3e-54 216.5 146 76.7
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 1.8e-54 216.1 142 81.0
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 1.8e-54 216.1 146 81.5
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 2.3e-54 215.7 136 80.1
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.1e-54 214.5 142 79.6
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 8.7e-54 213.8 142 78.2
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 2.5e-53 212.2 142 80.3
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 3.3e-53 211.8 134 79.1
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 4.3e-53 211.5 147 76.9
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 4.3e-53 211.5 142 79.6
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 5.7e-53 211.1 136 80.1
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 7.4e-53 210.7 142 79.6
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 9.7e-53 210.3 143 79.0
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 9.7e-53 210.3 137 79.6
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 1.3e-52 209.9 142 76.8
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 2.2e-52 209.1 137 80.3
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 2.8e-52 208.8 142 78.9
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 3.7e-52 208.4 147 75.5
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 3.7e-52 208.4 142 78.2
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 6.3e-52 207.6 142 75.4
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 8.2e-52 207.2 142 76.8
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 1.1e-51 206.8 142 76.8
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 1.1e-51 206.8 146 74.0
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 1.4e-51 206.5 142 76.1
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.8e-51 206.1 142 76.8
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 4.1e-51 204.9 146 71.9
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 4.1e-51 204.9 128 82.8
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 6.9e-51 204.1 142 74.6
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 6.9e-51 204.1 142 74.6
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 9.1e-51 203.8 142 77.5
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 9.1e-51 203.8 116 87.9
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.2e-50 203.4 144 76.4
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 1.5e-50 203.0 142 76.8
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 1.5e-50 203.0 111 93.7
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 2.0e-50 202.6 143 76.2
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 2.0e-50 202.6 143 76.2
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 5.9e-50 201.1 142 73.2
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.7e-49 199.5 142 76.1
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 2.2e-49 199.1 142 75.4
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 2.9e-49 198.7 143 74.8
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 2.9e-49 198.7 142 74.6
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 2.9e-49 198.7 142 73.2
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.8e-49 198.4 120 81.7
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 5.0e-49 198.0 142 74.6
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 6.5e-49 197.6 120 80.8
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 6.5e-49 197.6 134 78.4
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 8.5e-49 197.2 139 77.0
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 8.5e-49 197.2 120 82.5
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 1.4e-48 196.4 143 72.0
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 5.5e-48 194.5 145 73.1
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 5.5e-48 194.5 145 73.1
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.5e-48 194.5 120 80.0
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 5.5e-48 194.5 158 68.4
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 7.2e-48 194.1 125 80.8
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 7.2e-48 194.1 118 83.9
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 1.0e-46 190.3 143 71.3
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 1.0e-46 190.3 149 69.1
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.4e-46 189.9 142 73.2
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 1.7e-44 183.0 146 67.1
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 5.3e-43 177.9 146 62.3
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 2.0e-42 176.0 133 71.4
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 2.6e-42 175.6 119 76.5
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 1.0e-41 173.7 142 64.8
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 6.1e-39 164.5 150 64.0
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 1.1e-37 160.2 105 82.9
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 1.1e-37 160.2 118 71.2
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 6.3e-36 154.5 118 68.6
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 1.4e-35 153.3 83 95.2
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 1.4e-35 153.3 124 69.4
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 4.1e-35 151.8 100 79.0
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 7.7e-34 147.5 119 67.2
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 1.7e-33 146.4 119 65.5
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 1.7e-33 146.4 157 55.4
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 1.7e-33 146.4 150 58.0
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 2.9e-33 145.6 119 66.4
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 2.9e-33 145.6 119 66.4
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 5.0e-33 144.8 119 65.5
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 5.0e-33 144.8 119 65.5
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 8.5e-33 144.1 119 67.2
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 2.5e-32 142.5 122 65.6
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 3.2e-32 142.1 85 84.7
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 4.2e-32 141.7 86 82.6
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 4.2e-32 141.7 118 63.6
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.6e-31 139.8 147 55.1
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 2.7e-31 139.0 112 69.6
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 3.6e-31 138.7 131 58.0
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 4.7e-31 138.3 117 59.8
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 8.8e-30 134.0 85 82.4
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 1.7e-28 129.8 75 85.3
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 2.2e-28 129.4 174 48.3
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 5.3e-27 124.8 73 86.3
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 2.9e-25 119.0 89 69.7
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 6.5e-25 117.9 117 55.6
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 7.5e-21 104.4 136 44.1
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 6.5e-17 91.3 63 68.3
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 8.6e-17 90.9 111 49.5
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 2.8e-15 85.9 114 48.2
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 3.6e-15 85.5 84 59.5
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 1.8e-14 83.2 85 55.3
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.2e-10 70.5 42 78.6
Aa31LG10G7880 Aethionema arabicum HOM05D005449 ORTHO05D006916 1.1e-08 63.9 74 52.7
C06p20730 Brassica napus HOM05D005449 ORTHO05D027985 4.3e-08 62.0 66 53.0
BolC6t37256H Brassica oleracea HOM05D005449 ORTHO05D027985 4.3e-08 62.0 66 53.0
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 7.3e-08 61.2 33 81.8
CBR_g10859 Chara braunii HOM05D005449 ORTHO05D006916 3.6e-07 58.9 103 35.9


User provided reference genes

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