Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.2e-100 369.8 179 100.0
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 6.0e-84 314.3 180 90.6
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 5.7e-58 228.0 192 67.2
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 6.1e-52 208.0 181 65.2
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 3.0e-51 205.7 192 61.5
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.1e-50 203.8 187 61.5
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.5e-50 203.4 195 61.0
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.5e-50 203.4 170 64.1
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.8e-48 196.4 194 56.7
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.8e-48 196.4 194 56.7
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 3.1e-48 195.7 189 59.8
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 6.9e-48 194.5 193 57.5
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.0e-46 190.7 183 59.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 2.2e-46 189.5 188 59.6
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.2e-45 185.3 183 57.9
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.2e-45 184.5 184 57.1
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.1e-44 181.4 194 52.6
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 6.1e-44 181.4 189 52.9
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 7.9e-44 181.0 194 53.6
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.0e-43 180.6 185 56.8
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.3e-43 179.5 188 53.7
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.7e-43 177.9 194 53.1
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 8.8e-43 177.6 171 53.8
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 8.8e-43 177.6 183 55.2
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.5e-42 176.0 176 54.5
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 7.4e-42 174.5 179 60.3
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 9.7e-42 174.1 169 58.6
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 9.7e-42 174.1 169 56.8
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 9.7e-42 174.1 190 53.7
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 9.7e-42 174.1 187 56.7
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.7e-42 174.1 190 53.2
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 9.7e-42 174.1 194 53.1
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.3e-41 173.7 194 54.6
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-41 173.3 186 53.2
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.2e-41 172.9 183 55.7
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.2e-41 172.9 189 51.3
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 2.8e-41 172.6 187 57.2
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.8e-41 172.6 170 54.1
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 3.7e-41 172.2 188 49.5
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 4.8e-41 171.8 166 55.4
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.4e-40 170.2 196 50.5
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.4e-40 170.2 186 53.2
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.8e-40 169.9 182 54.4
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 2.4e-40 169.5 183 54.6
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-40 168.7 186 53.8
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-40 168.7 191 51.3
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 9.1e-40 167.5 181 54.1
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.2e-39 167.2 180 51.7
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.6e-39 166.0 181 54.1
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 3.4e-39 165.6 184 53.8
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.4e-39 165.6 189 52.9
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 3.4e-39 165.6 191 50.3
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 4.5e-39 165.2 183 52.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.7e-39 164.5 191 51.8
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 7.7e-39 164.5 205 48.3
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 7.7e-39 164.5 187 49.7
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.0e-38 164.1 195 50.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.7e-38 163.3 171 53.2
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.7e-38 163.3 177 52.5
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 1.7e-38 163.3 202 53.5
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 2.2e-38 162.9 190 48.9
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 2.9e-38 162.5 165 52.7
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 2.9e-38 162.5 184 52.2
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 2.9e-38 162.5 164 57.3
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 3.8e-38 162.2 176 52.3
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.8e-38 162.2 189 51.9
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 3.8e-38 162.2 176 53.4
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 8.5e-38 161.0 176 51.7
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 8.5e-38 161.0 174 51.7
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.4e-37 160.2 185 51.4
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.4e-37 160.2 199 48.7
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.4e-37 160.2 199 48.7
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.4e-37 160.2 199 48.7
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.4e-37 160.2 192 50.0
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.9e-37 159.8 180 52.2
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.9e-37 159.8 186 53.2
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.5e-37 159.5 173 53.2
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.5e-37 159.5 198 47.5
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 2.5e-37 159.5 175 55.4
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 4.2e-37 158.7 165 53.9
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 5.5e-37 158.3 165 55.2
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 5.5e-37 158.3 176 51.1
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 5.5e-37 158.3 176 51.1
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 5.5e-37 158.3 174 52.3
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 7.2e-37 157.9 171 50.9
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-36 157.1 172 51.2
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.6e-36 156.8 180 47.8
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-36 156.4 181 52.5
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 2.1e-36 156.4 178 52.2
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.1e-36 156.4 174 51.7
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.7e-36 156.0 179 48.0
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 3.6e-36 155.6 167 52.1
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.6e-36 155.6 175 52.0
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 3.6e-36 155.6 175 50.9
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.7e-36 155.2 194 49.0
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 6.1e-36 154.8 169 51.5
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.0e-35 154.1 173 48.6
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.4e-35 153.7 204 44.1
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.8e-35 153.3 171 49.1
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.8e-35 153.3 170 50.6
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.8e-35 153.3 180 51.7
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 2.3e-35 152.9 172 50.6
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 2.3e-35 152.9 172 50.6
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.9e-35 152.1 172 49.4
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 5.1e-35 151.8 172 50.0
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 5.1e-35 151.8 172 50.0
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 6.7e-35 151.4 173 50.9
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.1e-34 150.6 171 49.7
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.0e-34 149.8 175 48.6
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 2.6e-34 149.4 163 52.1
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 5.7e-34 148.3 175 48.6
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.7e-34 148.3 174 49.4
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 7.4e-34 147.9 176 48.9
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 9.7e-34 147.5 223 43.5
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-33 146.7 191 48.2
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.8e-33 146.0 173 50.3
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 6.3e-33 144.8 176 48.3
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 6.3e-33 144.8 176 48.3
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 6.3e-33 144.8 176 48.3
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 8.2e-33 144.4 168 53.6
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.4e-32 142.9 178 50.6
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.1e-32 141.0 182 48.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 2.6e-31 139.4 167 52.7
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 3.5e-31 139.0 164 50.0
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 5.9e-31 138.3 169 47.9
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.0e-30 137.5 175 50.3
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.0e-30 137.5 167 47.3
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-30 137.5 174 47.7
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.0e-30 137.5 183 47.0
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.3e-30 137.1 169 49.7
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.8e-30 135.6 176 48.3
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 5.0e-30 135.2 181 48.6
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 8.5e-30 134.4 170 48.8
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.1e-29 134.0 171 50.9
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-29 134.0 178 47.8
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-29 133.3 170 50.0
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.9e-29 133.3 168 48.8
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.1e-28 129.8 174 45.4
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 6.1e-28 128.3 177 44.1
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.4e-27 127.1 185 43.2
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 6.7e-27 124.8 165 44.8
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.3e-26 122.5 180 43.9
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-25 119.8 135 51.9
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 3.7e-25 119.0 157 43.9
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-24 117.1 167 45.5
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.4e-24 117.1 172 47.1
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.4e-24 116.3 161 42.9
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.1e-24 115.5 144 49.3
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 2.6e-23 112.8 202 40.1
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 3.5e-23 112.5 173 45.7
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.3e-22 110.5 144 48.6
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.7e-22 110.2 204 38.7
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 8.5e-22 107.8 279 30.1
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.2e-21 105.9 161 41.6
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.2e-20 104.0 176 41.5
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 4.7e-20 102.1 151 44.4
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 2.3e-19 99.8 203 36.9
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 8.3e-17 91.3 128 40.6
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.1e-16 90.9 206 34.5
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.8e-16 90.1 179 37.4
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.7e-15 86.3 210 31.9
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-15 85.9 98 48.0
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 4.5e-15 85.5 175 34.9
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-14 84.3 107 43.9
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-14 82.8 116 43.1
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.9e-14 82.8 140 42.9
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.5e-13 80.5 91 48.4
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-13 78.2 131 38.9
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 9.4e-13 77.8 204 33.8
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.8e-11 73.6 136 35.3
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.8e-11 73.6 184 31.5
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.2e-11 72.0 101 43.6
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 8.8e-11 71.2 120 38.3
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 3.4e-10 69.3 214 29.9
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.3e-09 65.1 55 63.6
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 4.1e-08 62.4 123 33.3
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.5e-07 58.9 51 49.0
Aqoxy5G02997 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 1.0e-06 57.8 212 25.5
Os01g0861400 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.0e-06 57.8 108 37.0
GSVIVG01032948001 Vitis vinifera HOM05D001131 ORTHO05D000972 1.0e-06 57.8 205 28.3
Manes.04G096900 Manihot esculenta HOM05D001131 ORTHO05D000972 1.3e-06 57.4 197 27.4
ATR0580G176 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.7e-06 57.0 176 30.7
Nn2g11432 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.9e-06 56.2 47 63.8
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 3.8e-06 55.8 122 33.6
Glyma.16G149600 Glycine max HOM05D001131 ORTHO05D000972 5.0e-06 55.5 199 27.1
Nn4g23903 Nelumbo nucifera HOM05D007903 ORTHO05D009925 6.6e-06 55.1 198 29.3


User provided reference genes

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