Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 3.2e-153 545.0 273 100.0
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.9e-145 519.2 273 96.0
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.4e-108 396.7 251 80.5
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 1.8e-108 396.4 269 79.2
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.6e-104 383.3 263 76.8
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 2.6e-99 365.9 256 75.4
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.5e-99 365.2 262 72.5
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.7e-98 363.2 249 75.9
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.2e-98 362.8 261 72.0
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 2.9e-98 362.5 262 71.8
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.2e-97 359.0 262 71.4
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.2e-97 359.0 246 74.4
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 5.5e-97 358.2 285 67.7
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 4.7e-96 355.1 250 74.4
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.4e-95 353.6 266 71.8
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.3e-95 352.8 262 71.8
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 6.7e-95 351.3 262 71.4
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.3e-94 349.0 258 71.3
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 4.4e-94 348.6 270 71.5
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 2.2e-93 346.3 251 71.7
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 4.8e-93 345.1 270 70.0
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 1.8e-92 343.2 251 73.3
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.1e-92 342.0 270 69.3
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 7.0e-92 341.3 251 72.9
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 9.1e-92 340.9 249 72.7
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 9.1e-92 340.9 265 69.8
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.0e-90 337.4 262 69.1
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 6.5e-90 334.7 269 66.9
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.1e-89 334.0 258 69.8
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.5e-89 333.6 261 68.2
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.5e-89 333.6 264 68.9
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.5e-89 333.6 265 67.9
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 9.4e-89 330.9 260 69.2
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 5.2e-87 325.1 264 68.2
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 8.8e-87 324.3 232 72.8
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 1.2e-86 323.9 257 67.3
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 3.4e-86 322.4 257 68.1
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 4.4e-86 322.0 225 75.6
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 9.8e-86 320.9 265 65.3
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 4.8e-85 318.5 232 76.7
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.8e-84 316.6 267 67.0
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 2.4e-84 316.2 257 70.0
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.2e-83 313.9 266 65.0
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.6e-83 313.5 254 68.9
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 2.0e-83 313.2 221 74.2
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.7e-83 312.8 265 66.8
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.5e-83 312.4 263 65.0
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 4.5e-83 312.0 246 68.7
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 5.9e-83 311.6 261 64.4
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 7.7e-83 311.2 246 68.3
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.0e-82 310.8 263 65.0
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.8e-82 308.9 246 67.9
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 5.0e-82 308.5 230 72.6
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 6.6e-82 308.1 245 68.6
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.1e-81 307.4 307 57.7
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.3e-81 305.8 267 63.7
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 4.2e-81 305.4 231 72.3
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 7.2e-81 304.7 249 67.1
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 2.1e-80 303.1 231 71.9
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.6e-80 302.4 289 58.8
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 6.1e-80 301.6 267 63.3
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 1.0e-79 300.8 275 61.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.4e-79 300.4 250 67.6
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.8e-79 300.1 248 63.3
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.8e-79 300.1 252 67.1
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 4.0e-79 298.9 224 71.9
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.0e-79 298.9 244 66.4
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.9e-79 297.7 252 67.1
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 8.9e-79 297.7 267 64.4
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.3e-77 293.9 262 64.1
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.3e-77 293.9 291 60.5
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.7e-77 293.5 267 60.3
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 4.3e-73 278.9 266 60.9
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 4.3e-73 278.9 263 59.7
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 5.6e-73 278.5 264 61.0
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 2.4e-68 263.1 266 59.8
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.1e-68 262.3 221 66.1
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 3.5e-67 259.2 260 57.7
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 7.3e-65 251.5 408 43.1
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.6e-64 250.4 269 56.9
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 2.1e-64 250.0 231 63.6
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 4.7e-64 248.8 260 57.3
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 6.2e-64 248.4 235 60.9
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.3e-63 246.5 267 56.6
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 3.1e-63 246.1 253 59.7
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 3.4e-62 242.7 229 60.7
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 2.9e-61 239.6 185 69.2
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 3.7e-61 239.2 261 55.6
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 8.3e-61 238.0 188 67.6
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.2e-60 236.1 212 61.3
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.2e-60 236.1 212 60.8
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 9.2e-60 234.6 267 53.6
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 3.5e-59 232.6 194 64.9
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 3.5e-59 232.6 261 55.6
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 6.0e-59 231.9 180 72.8
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.9e-57 226.9 272 52.6
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 8.1e-56 221.5 205 60.0
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 8.1e-56 221.5 197 63.5
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 3.4e-54 216.1 261 53.3
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 3.4e-54 216.1 261 53.3
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 1.4e-52 210.7 250 52.8
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 1.4e-52 210.7 250 52.8
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 1.4e-52 210.7 250 52.8
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.1e-52 209.1 189 61.9
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 9.2e-52 208.0 201 61.7
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 6.0e-51 205.3 230 53.0
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.0e-50 203.0 253 51.8
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 8.6e-50 201.4 242 55.4
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 9.6e-49 198.0 230 53.0
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 8.1e-48 194.9 251 50.6
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 5.8e-46 188.7 275 46.9
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 3.8e-45 186.0 228 52.2
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 3.2e-44 183.0 301 45.2
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.7e-42 177.2 226 54.9
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 5.1e-42 175.6 285 44.2
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 5.6e-41 172.2 188 52.7
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 9.3e-28 128.3 121 62.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.5e-27 126.3 123 59.3
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 6.7e-26 122.1 152 51.3
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.6e-24 117.5 204 42.6
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 2.1e-24 117.1 169 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.0e-21 108.2 197 40.1
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.3e-21 107.8 56 89.3
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 2.1e-19 100.5 212 41.0
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 2.4e-15 87.0 168 43.5
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 2.0e-14 84.0 76 59.2
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.3e-13 81.3 70 62.9
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.9e-12 77.4 93 47.3
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.7e-11 73.6 131 44.3
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.9e-10 69.7 104 47.1
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 2.2e-08 63.9 48 64.6
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 4.8e-08 62.8 93 39.8
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 3.1e-07 60.1 58 55.2


User provided reference genes

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