Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 4.5e-101 371.3 193 100.0
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 4.8e-87 324.7 173 96.5
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 8.5e-68 260.8 192 73.4
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 9.7e-64 247.3 201 69.2
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 1.6e-58 229.9 199 64.8
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 3.3e-56 222.2 199 63.8
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 4.4e-56 221.9 201 63.7
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 9.7e-56 220.7 200 64.0
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 3.7e-55 218.8 199 62.3
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 6.3e-55 218.0 200 62.5
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 1.1e-54 217.2 199 60.8
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 2.4e-54 216.1 195 64.6
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 7.0e-54 214.5 195 64.1
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 9.1e-54 214.2 196 61.2
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 6.5e-52 208.0 197 64.0
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 8.5e-52 207.6 198 62.1
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 8.5e-52 207.6 200 61.5
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 3.2e-51 205.7 203 62.1
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.2e-51 205.7 193 59.6
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 4.2e-51 205.3 195 62.1
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 7.2e-51 204.5 203 62.6
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 9.4e-51 204.1 193 59.1
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 1.2e-50 203.8 193 60.1
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.6e-50 203.4 193 60.1
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 1.6e-50 203.4 199 61.8
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 2.1e-50 203.0 192 59.4
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 2.1e-50 203.0 202 56.4
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 4.7e-50 201.8 200 61.5
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 6.1e-50 201.4 197 60.4
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 8.0e-50 201.1 197 60.9
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.0e-49 200.7 203 61.6
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 1.0e-49 200.7 203 61.6
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.0e-49 200.7 203 61.6
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 2.3e-49 199.5 201 58.2
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 2.3e-49 199.5 193 58.5
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 4.0e-49 198.7 194 55.7
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 5.2e-49 198.4 188 63.8
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 6.8e-49 198.0 193 57.5
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 8.8e-49 197.6 195 60.5
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 1.5e-48 196.8 192 57.8
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 4.4e-48 195.3 192 56.2
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 1.3e-47 193.7 193 54.9
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 1.7e-47 193.4 197 55.8
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 2.2e-47 193.0 188 58.0
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 2.2e-47 193.0 188 58.0
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 3.7e-47 192.2 197 54.3
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 1.8e-46 189.9 190 61.6
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 4.1e-46 188.7 197 57.4
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 9.1e-46 187.6 191 57.1
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 1.6e-45 186.8 196 55.1
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 2.7e-45 186.0 188 55.9
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 2.7e-45 186.0 188 55.9
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 4.5e-45 185.3 196 56.6
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 4.5e-45 185.3 196 56.6
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 5.9e-45 184.9 196 55.6
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 7.7e-45 184.5 192 52.1
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 1.3e-44 183.7 192 52.1
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 1.3e-44 183.7 201 55.2
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 1.7e-44 183.3 188 58.0
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 2.9e-44 182.6 205 52.7
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.1e-43 180.6 205 54.6
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.1e-43 180.6 202 52.0
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 1.5e-43 180.3 195 57.4
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 1.5e-43 180.3 194 54.1
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 1.9e-43 179.9 197 51.8
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 2.5e-43 179.5 186 57.5
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 2.5e-43 179.5 189 53.4
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 3.2e-43 179.1 206 52.4
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 3.2e-43 179.1 199 52.8
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 3.2e-43 179.1 199 53.8
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 5.5e-43 178.3 184 56.5
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 5.5e-43 178.3 209 50.2
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 7.2e-43 177.9 204 52.5
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 7.2e-43 177.9 202 52.0
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 9.4e-43 177.6 193 54.9
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 9.4e-43 177.6 210 55.2
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 2.1e-42 176.4 177 54.8
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 2.1e-42 176.4 204 52.0
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 2.7e-42 176.0 204 52.0
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 4.7e-42 175.3 200 53.5
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 6.1e-42 174.9 197 51.8
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 8.0e-42 174.5 197 53.8
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 8.0e-42 174.5 195 50.8
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 1.4e-41 173.7 189 54.5
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 2.6e-40 169.5 194 51.5
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 4.4e-40 168.7 193 51.3
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 7.5e-40 167.9 196 51.5
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.7e-39 166.8 201 53.7
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 3.7e-39 165.6 193 50.3
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 1.8e-38 163.3 196 48.5
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 2.4e-38 162.9 193 50.3
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 3.1e-38 162.5 192 49.5
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 3.5e-37 159.1 229 46.3
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 5.9e-37 158.3 194 48.5
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 1.0e-36 157.5 176 54.5
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.9e-35 153.3 158 53.8
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.9e-35 153.3 158 53.8
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 5.5e-35 151.8 203 44.8
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 2.1e-34 149.8 203 44.8
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 3.6e-34 149.1 181 48.6
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.8e-33 146.7 198 46.5
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 5.2e-33 145.2 165 51.5
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 5.2e-33 145.2 198 46.0
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 3.4e-32 142.5 188 48.9
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 5.7e-32 141.7 194 45.9
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 1.1e-30 137.5 199 44.2
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 2.7e-29 132.9 200 42.0
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 8.6e-28 127.9 205 43.4
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 4.7e-26 122.1 209 41.6
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 2.6e-24 116.3 148 47.3
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 1.3e-23 114.0 188 41.5
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 6.4e-23 111.7 219 38.8
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 1.1e-22 110.9 220 40.0
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 3.2e-22 109.4 214 38.8
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 5.4e-22 108.6 207 39.1
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 2.0e-21 106.7 209 38.3
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 2.0e-21 106.7 210 39.0
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 2.0e-21 106.7 210 39.0
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 2.0e-21 106.7 216 37.5
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 6.0e-21 105.1 228 38.6
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 7.8e-21 104.8 210 38.6
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 1.7e-20 103.6 215 38.6
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 3.0e-20 102.8 225 38.2
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.9e-19 100.1 117 54.7
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 6.8e-17 91.7 209 36.4
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 2.2e-15 86.7 202 36.6
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 5.4e-14 82.0 206 34.5
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 2.1e-13 80.1 194 34.0
Actinidia21410 Actinidia chinensis HOM05D000446 ORTHO05D000321 2.7e-13 79.7 93 51.6
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 3.5e-13 79.3 96 46.9
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 8.1e-10 68.2 180 30.0
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.1e-09 67.8 183 31.1
SGA_v2.0_scaffold14G06923 Striga asiatica HOM05D001935 ORTHO05D001700 1.4e-09 67.4 127 33.9
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.8e-09 67.0 193 32.1
Atru.chr1.1571 Acer truncatum HOM05D001935 ORTHO05D001700 1.5e-08 63.9 173 31.8
Duzib133G0729 Durio zibethinus HOM05D001935 ORTHO05D001700 1.5e-08 63.9 191 29.3
HanXRQChr08g0212901 Helianthus annuus HOM05D001935 ORTHO05D001700 1.5e-08 63.9 179 31.8
TWI31G0738 Tripterygium wilfordii HOM05D001935 ORTHO05D001700 1.5e-08 63.9 178 29.8
CANSAT78G1422 Cannabis sativa HOM05D001935 ORTHO05D001700 2.6e-08 63.2 174 33.3
Thecc.04G125800 Theobroma cacao HOM05D001935 ORTHO05D001700 2.6e-08 63.2 180 30.0
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.3e-07 60.8 176 31.8
Actinidia36351 Actinidia chinensis HOM05D001935 ORTHO05D001700 2.2e-07 60.1 171 31.0
Potri.008G127200 Populus trichocarpa HOM05D001935 ORTHO05D001700 4.9e-07 58.9 179 30.7
Migut.E00401 Erythranthe guttata HOM05D001935 ORTHO05D001700 6.4e-07 58.5 189 29.1
ATR0326G051 Amborella trichopoda HOM05D001935 ORTHO05D001700 1.4e-06 57.4 196 29.1
CDE06G0938 Ceratophyllum demersum HOM05D001935 ORTHO05D001700 1.4e-06 57.4 174 32.2
HanXRQChr07g0189891 Helianthus annuus HOM05D001935 ORTHO05D001700 1.4e-06 57.4 178 28.1
CiPaw.03G066100 Carya illinoinensis HOM05D001935 ORTHO05D001700 1.9e-06 57.0 189 29.6
Glyma.10G266300 Glycine max HOM05D001935 ORTHO05D001700 1.9e-06 57.0 179 29.1
Nn3g18024 Nelumbo nucifera HOM05D001935 ORTHO05D001700 1.9e-06 57.0 193 29.5
Psat6g223120 Pisum sativum HOM05D001935 ORTHO05D001700 1.9e-06 57.0 193 31.1
THA.LOC104802908 Tarenaya hassleriana HOM05D001935 ORTHO05D001700 1.9e-06 57.0 177 27.7
MSTRG.2193 Avicennia marina HOM05D001935 ORTHO05D001700 2.4e-06 56.6 189 29.6
Sabra08G0096000 Salix brachista HOM05D001935 ORTHO05D001700 2.4e-06 56.6 182 29.1
ATR0326G068 Amborella trichopoda HOM05D001935 ORTHO05D001700 3.2e-06 56.2 171 30.4
Potri.010G116000 Populus trichocarpa HOM05D001935 ORTHO05D001700 3.2e-06 56.2 171 30.4
Medtr1g108640 Medicago truncatula HOM05D001935 ORTHO05D001700 4.1e-06 55.8 179 29.1
Rhsim09G0068600 Rhododendron simsii HOM05D001935 ORTHO05D001700 4.1e-06 55.8 178 29.8
RcHm_v2.0_Chr3g0493681 Rosa chinensis HOM05D001935 ORTHO05D001700 5.4e-06 55.5 195 28.7
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 5.4e-06 55.5 172 30.2
DCAR_007278 Daucus carota HOM05D001935 ORTHO05D001700 7.1e-06 55.1 83 39.8
Duzib211G0529 Durio zibethinus HOM05D001935 ORTHO05D001700 7.1e-06 55.1 171 30.4
Nitab4.5_0000414g0010 Nicotiana tabacum HOM05D001935 ORTHO05D001700 7.1e-06 55.1 94 36.2
Nitab4.5_0001648g0030 Nicotiana tabacum HOM05D001935 ORTHO05D001700 7.1e-06 55.1 94 36.2
SalBow8G0261 Salvia bowleyana HOM05D001935 ORTHO05D001700 7.1e-06 55.1 96 35.4


User provided reference genes

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