Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 2.0e-40 168.7 88 100.0
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 3.9e-36 154.5 88 90.9
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 2.8e-34 148.3 88 88.6
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 1.6e-29 132.5 86 79.1
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 9.0e-25 116.7 82 75.6
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 2.6e-24 115.2 84 76.2
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 3.4e-24 114.8 82 74.4
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 7.6e-24 113.6 84 71.4
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 3.8e-23 111.3 89 68.5
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 6.5e-23 110.5 83 73.5
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 1.4e-22 109.4 84 70.2
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 2.5e-22 108.6 80 71.2
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 2.7e-21 105.1 86 68.6
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 2.7e-21 105.1 86 66.3
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 2.7e-21 105.1 82 69.5
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 3.5e-21 104.8 85 68.2
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 6.1e-21 104.0 81 67.9
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 1.0e-20 103.2 84 69.0
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 1.0e-20 103.2 82 67.1
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 1.3e-20 102.8 80 71.2
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 1.8e-20 102.4 80 68.8
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 2.3e-20 102.1 83 66.3
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 3.0e-20 101.7 83 65.1
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 3.9e-20 101.3 90 63.3
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 5.1e-20 100.9 83 65.1
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 6.7e-20 100.5 83 65.1
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 8.7e-20 100.1 82 64.6
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.5e-19 99.4 81 66.7
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 1.5e-19 99.4 84 61.9
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.9e-19 99.0 81 66.7
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 1.9e-19 99.0 84 65.5
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 3.3e-19 98.2 78 65.4
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 4.3e-19 97.8 84 66.7
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 4.3e-19 97.8 84 66.7
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 5.7e-19 97.4 83 62.7
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 5.7e-19 97.4 78 66.7
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 7.4e-19 97.1 82 65.9
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.3e-18 96.3 78 65.4
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.6e-18 95.9 84 65.5
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 2.2e-18 95.5 85 63.5
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 2.2e-18 95.5 86 65.1
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 2.8e-18 95.1 79 64.6
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 2.8e-18 95.1 78 65.4
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 2.8e-18 95.1 76 67.1
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 4.8e-18 94.4 84 61.9
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.8e-18 94.4 82 65.9
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.8e-18 94.4 79 68.4
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 8.2e-18 93.6 73 67.1
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 1.1e-17 93.2 76 65.8
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 1.8e-17 92.4 82 64.6
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.8e-17 92.4 82 64.6
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 2.4e-17 92.0 68 70.6
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 3.1e-17 91.7 78 64.1
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 4.1e-17 91.3 79 64.6
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 4.1e-17 91.3 84 63.1
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 4.1e-17 91.3 80 68.8
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 5.3e-17 90.9 80 63.8
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 6.5e-15 84.0 87 59.8
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 1.1e-14 83.2 79 59.5
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 1.1e-14 83.2 84 56.0
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 1.4e-14 82.8 85 55.3
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 1.9e-14 82.4 82 56.1
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 2.5e-14 82.0 79 60.8
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 2.5e-14 82.0 76 56.6
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 1.6e-13 79.3 78 55.1
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 1.6e-13 79.3 76 56.6
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 2.1e-13 79.0 74 58.1
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 2.1e-13 79.0 71 67.6
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 2.7e-13 78.6 76 60.5
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 2.7e-13 78.6 89 52.8
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 3.6e-13 78.2 79 54.4
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 4.6e-13 77.8 87 52.9
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 1.8e-12 75.9 76 56.6
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 1.8e-12 75.9 78 57.7
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 1.8e-12 75.9 74 56.8
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 1.8e-12 75.9 82 52.4
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 2.3e-12 75.5 60 63.3
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 3.0e-12 75.1 76 59.2
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 5.1e-12 74.3 80 52.5
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 6.7e-12 73.9 81 56.8
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 2.5e-11 72.0 81 53.1
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 4.3e-11 71.2 74 59.5
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 7.4e-11 70.5 81 53.1
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 1.7e-10 69.3 59 61.0
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 2.8e-10 68.6 80 56.2
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 2.8e-10 68.6 59 64.4
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 4.8e-10 67.8 84 52.4
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 8.2e-10 67.0 85 52.9
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 1.1e-09 66.6 59 62.7
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 2.4e-09 65.5 84 52.4
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 3.1e-09 65.1 62 58.1
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 4.1e-09 64.7 82 45.1
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 6.9e-09 63.9 78 56.4
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 1.2e-08 63.2 84 50.0
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 3.4e-08 61.6 68 45.6
ATR0414G001 Amborella trichopoda HOM05D007627 ORTHO05D009640 4.5e-08 61.2 67 46.3
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 1.0e-07 60.1 86 50.0


User provided reference genes

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