Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 0.0e+00 1765.7 847 100.0
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 0.0e+00 1444.9 839 84.4
Haze_05044 Corylus avellana HOM05D004658 ORTHO05D005927 0.0e+00 1429.1 863 82.0
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 0.0e+00 1391.7 858 80.1
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 0.0e+00 1362.1 907 75.2
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 0.0e+00 1361.7 849 78.8
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 0.0e+00 1351.3 852 77.9
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 0.0e+00 1350.9 853 78.2
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 0.0e+00 1350.1 858 77.6
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 0.0e+00 1349.7 862 76.9
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 0.0e+00 1343.9 859 77.3
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 0.0e+00 1338.2 860 77.0
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 0.0e+00 1337.4 852 76.2
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 0.0e+00 1335.1 852 76.8
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 0.0e+00 1334.7 845 77.5
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 0.0e+00 1332.4 837 77.5
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 0.0e+00 1332.4 848 76.5
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 0.0e+00 1330.1 848 76.4
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1328.2 849 77.3
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 0.0e+00 1323.9 856 76.3
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 0.0e+00 1323.1 827 78.7
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 0.0e+00 1320.8 855 76.5
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 0.0e+00 1319.7 850 75.1
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1319.7 855 77.0
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 0.0e+00 1319.3 850 76.8
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 0.0e+00 1319.3 852 76.4
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1318.1 852 76.4
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 0.0e+00 1317.4 824 78.0
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 0.0e+00 1316.2 831 78.1
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 0.0e+00 1314.7 853 75.8
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 0.0e+00 1314.7 852 74.5
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 0.0e+00 1313.9 845 76.2
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1313.1 853 75.8
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1310.0 870 75.5
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 0.0e+00 1310.0 855 75.4
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 0.0e+00 1308.5 842 76.7
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 0.0e+00 1307.7 850 75.1
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1307.7 842 76.2
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 0.0e+00 1306.2 848 75.5
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 0.0e+00 1305.8 852 73.9
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1304.7 868 75.1
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 0.0e+00 1303.9 883 73.3
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1303.1 848 75.4
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 0.0e+00 1302.7 823 76.9
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 0.0e+00 1302.3 825 76.2
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 0.0e+00 1302.0 848 74.6
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 0.0e+00 1300.8 844 75.7
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 0.0e+00 1300.4 850 74.6
COL.COLO4_23230 Corchorus olitorius HOM05D004658 ORTHO05D005927 0.0e+00 1298.9 846 75.8
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 0.0e+00 1298.5 842 76.2
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 0.0e+00 1298.1 852 73.9
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 0.0e+00 1297.7 844 75.6
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 0.0e+00 1296.2 824 76.5
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1295.4 824 76.3
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1295.0 845 75.1
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1293.9 824 76.1
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 0.0e+00 1293.5 824 76.3
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1292.3 854 74.2
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 0.0e+00 1292.3 851 74.1
Sabra14G0089400 Salix brachista HOM05D004658 ORTHO05D005927 0.0e+00 1291.9 858 74.0
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 0.0e+00 1291.2 831 75.3
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 0.0e+00 1288.9 845 73.7
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 0.0e+00 1288.9 849 74.3
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 0.0e+00 1288.1 823 76.1
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 0.0e+00 1288.1 854 73.9
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 0.0e+00 1286.6 847 75.0
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 0.0e+00 1285.4 860 73.4
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 0.0e+00 1283.5 851 72.0
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 0.0e+00 1282.7 852 74.1
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 0.0e+00 1281.9 915 71.1
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 0.0e+00 1281.2 836 74.0
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 0.0e+00 1281.2 891 71.3
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 0.0e+00 1281.2 835 73.8
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 0.0e+00 1280.8 856 73.9
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 0.0e+00 1274.2 817 75.8
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 0.0e+00 1274.2 831 73.9
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 0.0e+00 1270.4 842 73.4
ClCG09G005080 Citrullus lanatus HOM05D004658 ORTHO05D005927 0.0e+00 1267.7 833 74.1
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 0.0e+00 1266.9 854 73.3
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 0.0e+00 1266.5 835 73.7
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 0.0e+00 1263.8 836 74.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 0.0e+00 1261.5 846 72.9
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 0.0e+00 1260.7 831 73.5
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 0.0e+00 1260.0 845 73.6
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 0.0e+00 1254.2 851 73.0
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 0.0e+00 1251.9 852 71.5
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 0.0e+00 1249.6 848 73.8
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 0.0e+00 1248.8 853 70.9
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 0.0e+00 1245.0 846 71.6
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 0.0e+00 1244.6 810 73.1
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 0.0e+00 1241.9 817 73.1
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 0.0e+00 1240.7 817 74.4
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 0.0e+00 1238.4 850 70.8
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 0.0e+00 1236.1 810 74.1
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 0.0e+00 1215.3 866 68.7
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 0.0e+00 1212.2 902 67.6
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 0.0e+00 1206.8 777 74.3
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1204.9 760 77.8
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 0.0e+00 1191.8 841 70.2
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 0.0e+00 1171.8 838 69.3
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 0.0e+00 1164.4 727 77.7
Haze_05045 Corylus avellana HOM05D004658 ORTHO05D005927 0.0e+00 1155.6 826 71.8
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 0.0e+00 1144.0 826 66.9
Haze_05046 Corylus avellana HOM05D004658 ORTHO05D005927 0.0e+00 1134.4 840 69.2
SHI28963 Sapria himalayana HOM05D004658 ORTHO05D005927 0.0e+00 1127.5 837 66.2
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 0.0e+00 1100.1 843 63.8
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 0.0e+00 1086.2 841 64.1
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 8.6e-306 1053.5 813 62.1
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 3.0e-303 1045.0 775 68.6
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 3.5e-299 1031.6 842 60.6
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 5.6e-297 1024.2 828 59.5
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 2.0e-294 1015.8 819 60.1
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 3.5e-291 1005.0 871 61.0
Atru.chr5.997 Acer truncatum HOM05D004658 ORTHO05D005927 4.6e-291 1004.6 655 74.2
Sopen01g031220 Solanum pennellii HOM05D004658 ORTHO05D005927 1.0e-290 1003.4 680 72.1
Ciclev10000356m.g Citrus clementina HOM05D004658 ORTHO05D005927 7.8e-283 977.2 827 60.7
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 2.1e-272 942.6 842 56.1
Dinv33118 Davidia involucrata HOM05D004658 ORTHO05D005927 1.7e-258 896.3 565 78.2
BolC4t28757H Brassica oleracea HOM05D004658 ORTHO05D005927 3.0e-234 815.8 521 74.9
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 1.3e-224 783.9 508 77.2
Nitab4.5_0008277g0040 Nicotiana tabacum HOM05D004658 ORTHO05D005927 1.4e-215 753.8 848 49.4
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 1.8e-210 736.9 957 42.5
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 4.2e-204 715.7 839 44.5
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 2.9e-189 666.4 839 44.0
FAN13G1327 Fragaria x ananassa HOM05D004658 ORTHO05D005927 9.9e-161 571.6 383 72.8
MD00G1179100 Malus domestica HOM05D004658 ORTHO05D005927 2.8e-147 526.9 352 71.9
CBR_g25724 Chara braunii HOM05D004658 ORTHO05D000184 2.0e-100 371.3 385 46.8
Actinidia21401 Actinidia chinensis HOM05D004658 ORTHO05D005927 2.2e-96 357.8 209 78.0
ECA232G2110 Erigeron canadensis HOM05D004658 ORTHO05D005927 2.5e-95 354.4 698 34.8
RcHm_v2.0_Chr5g0055721 Rosa chinensis HOM05D004658 ORTHO05D005927 2.0e-92 344.7 250 67.6
Mapoly0049s0016 Marchantia polymorpha HOM05D004658 ORTHO05D005927 2.9e-88 330.9 281 61.2
Atru.chr5.996 Acer truncatum HOM05D004658 ORTHO05D005927 1.8e-85 321.6 208 78.4
BcaC02g12572 Brassica carinata HOM05D004658 ORTHO05D005927 8.8e-77 292.7 172 82.6
BolC4t21687H Brassica oleracea HOM05D004658 ORTHO05D005927 8.8e-77 292.7 172 82.6
Cfa005794 Carpinus fangiana HOM05D004658 ORTHO05D005927 7.5e-76 289.7 205 74.6
SEGI_07403 Sequoiadendron giganteum HOM05D004658 ORTHO05D005927 9.8e-76 289.3 185 74.6
CAN.G100.80 Capsicum annuum HOM05D004658 ORTHO05D005927 2.2e-75 288.1 188 76.6
Mapoly1060s0001 Marchantia polymorpha HOM05D004658 ORTHO05D005927 9.5e-71 272.7 209 65.1
C04p00510 Brassica napus HOM05D004658 ORTHO05D005927 1.0e-69 269.2 151 85.4
CBR_g25720 Chara braunii HOM05D005350 ORTHO05D008838 2.9e-64 251.1 238 56.3
Mapoly0893s0002 Marchantia polymorpha HOM05D004658 ORTHO05D005927 6.6e-64 250.0 198 64.1
C04p00490 Brassica napus HOM05D004658 ORTHO05D005927 3.7e-59 234.2 137 83.2
Lj1C17G9 Lonicera japonica HOM05D004658 ORTHO05D005927 1.2e-52 212.6 239 49.4
Dinv33117 Davidia involucrata HOM05D004658 ORTHO05D005927 1.7e-51 208.8 188 56.9
SMO200G0105 Selaginella moellendorffii HOM05D004658 ORTHO05D000832 1.9e-42 178.7 307 36.2
Nn6g32423 Nelumbo nucifera HOM05D004658 ORTHO05D005927 3.6e-38 164.5 117 71.8
Os07g0689400 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 1.6e-33 149.1 126 55.6
RcHm_v2.0_Chr5g0055731 Rosa chinensis HOM05D004658 ORTHO05D005927 3.9e-32 144.4 99 71.7
SEGI_04992 Sequoiadendron giganteum HOM05D004658 ORTHO05D005927 8.4e-27 126.7 76 72.4
Actinidia21400 Actinidia chinensis HOM05D004658 ORTHO05D005927 1.0e-24 119.8 80 77.5
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 8.1e-22 110.2 64 75.0
Cre14.g629102 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 2.6e-20 105.1 75 60.0
Nn3g19817 Nelumbo nucifera HOM05D004658 ORTHO05D005927 9.0e-13 80.1 61 68.9
CAN.G2.16 Capsicum annuum HOM05D000610 ORTHO05D001284 1.5e-12 79.3 44 79.5
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 8.4e-11 73.6 49 69.4
Actinidia21402 Actinidia chinensis HOM05D004658 ORTHO05D054698 1.9e-10 72.4 53 60.4
PGSC0003DMG400013444 Solanum tuberosum HOM05D003117 ORTHO05D003612 1.6e-09 69.3 209 26.3
Solyc03g005340.4 Solanum lycopersicum HOM05D003117 ORTHO05D003612 7.9e-09 67.0 209 25.8
Sopen03g001380 Solanum pennellii HOM05D003117 ORTHO05D003612 5.1e-08 64.3 209 25.4
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 6.7e-08 63.9 208 26.0
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 1.5e-07 62.8 244 29.1
Mapoly4207s0001 Marchantia polymorpha HOM05D004658 ORTHO05D253917 1.9e-07 62.4 51 62.7
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 1.9e-07 62.4 220 30.0
MD16G1205200 Malus domestica HOM05D003117 ORTHO05D003612 5.7e-07 60.8 215 26.0
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 5.7e-07 60.8 239 27.2
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 9.6e-07 60.1 240 28.8
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 9.6e-07 60.1 223 27.8
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 9.6e-07 60.1 209 25.4
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 9.6e-07 60.1 259 28.2
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 2.1e-06 58.9 180 26.7
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 2.1e-06 58.9 225 29.8
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 2.8e-06 58.5 283 25.8
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 2.8e-06 58.5 225 28.4
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 3.7e-06 58.2 209 23.9
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 4.8e-06 57.8 238 29.0
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 4.8e-06 57.8 223 28.3
Cc03_g04630 Coffea canephora HOM05D003117 ORTHO05D003612 8.2e-06 57.0 180 27.2
Pp3c12_21080 Physcomitrium patens HOM05D003117 ORTHO05D003612 8.2e-06 57.0 170 25.9


User provided reference genes

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