Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005794 Carpinus fangiana HOM05D004658 ORTHO05D005927 1.3e-134 483.0 235 100.0
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 1.4e-85 320.1 218 76.1
COL.COLO4_23230 Corchorus olitorius HOM05D004658 ORTHO05D005927 7.9e-84 314.3 225 72.0
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 3.9e-83 312.0 223 73.1
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 5.1e-83 311.6 223 74.9
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 1.9e-82 309.7 223 73.1
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 7.4e-82 307.8 223 73.1
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 4.8e-81 305.1 223 72.2
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 6.2e-81 304.7 223 72.2
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 8.1e-81 304.3 224 71.9
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 1.4e-80 303.5 223 70.9
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 2.4e-80 302.8 222 71.6
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 3.1e-80 302.4 230 70.0
Haze_05046 Corylus avellana HOM05D004658 ORTHO05D005927 3.1e-80 302.4 203 77.8
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 3.1e-80 302.4 223 70.4
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 4.0e-80 302.0 222 72.5
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 5.3e-80 301.6 223 71.3
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 6.9e-80 301.2 223 71.3
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 6.9e-80 301.2 216 72.2
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 1.2e-79 300.4 217 71.0
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 2.0e-79 299.7 223 70.4
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 2.6e-79 299.3 223 70.0
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 3.4e-79 298.9 223 71.3
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 3.4e-79 298.9 223 71.3
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 3.4e-79 298.9 223 70.9
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 4.5e-79 298.5 223 71.3
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 4.5e-79 298.5 223 71.3
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 5.8e-79 298.1 216 72.7
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 5.8e-79 298.1 215 71.6
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 7.6e-79 297.7 223 69.5
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 1.0e-78 297.4 223 70.4
Atru.chr5.996 Acer truncatum HOM05D004658 ORTHO05D005927 1.3e-78 297.0 221 70.6
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 1.3e-78 297.0 213 72.8
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 2.9e-78 295.8 223 70.9
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 3.8e-78 295.4 221 70.6
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 3.8e-78 295.4 223 70.9
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 8.4e-78 294.3 222 69.8
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 1.1e-77 293.9 223 70.9
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 1.4e-77 293.5 223 69.1
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 4.2e-77 292.0 227 68.7
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 9.3e-77 290.8 223 68.2
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 1.2e-76 290.4 225 69.3
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 2.7e-76 289.3 223 66.8
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 3.5e-76 288.9 240 64.2
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 7.9e-76 287.7 223 67.7
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 1.0e-75 287.3 240 65.8
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 1.0e-75 287.3 240 65.8
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 1.0e-75 287.3 202 73.8
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 1.0e-75 287.3 222 68.0
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.3e-75 287.0 230 65.2
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 1.8e-75 286.6 224 68.3
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 3.0e-75 285.8 215 70.7
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 3.0e-75 285.8 205 74.6
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 3.0e-75 285.8 218 67.9
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 3.0e-75 285.8 224 69.2
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 3.9e-75 285.4 224 68.8
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 3.9e-75 285.4 214 71.0
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 5.1e-75 285.0 230 65.7
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 5.1e-75 285.0 218 67.9
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 6.7e-75 284.6 224 68.3
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 6.7e-75 284.6 239 65.7
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 8.7e-75 284.3 225 68.9
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 1.1e-74 283.9 224 68.3
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 1.1e-74 283.9 224 68.3
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 1.1e-74 283.9 225 68.0
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 1.1e-74 283.9 224 68.3
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 1.1e-74 283.9 222 68.9
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 1.5e-74 283.5 225 68.4
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 2.5e-74 282.7 215 69.3
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 2.5e-74 282.7 225 68.4
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 2.5e-74 282.7 225 68.0
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 3.3e-74 282.3 225 68.0
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 4.3e-74 282.0 211 70.1
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 5.7e-74 281.6 213 69.0
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 5.7e-74 281.6 223 69.5
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 5.7e-74 281.6 224 68.3
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 7.4e-74 281.2 222 69.4
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 9.6e-74 280.8 224 67.9
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 9.6e-74 280.8 224 67.9
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 9.6e-74 280.8 225 68.0
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 1.3e-73 280.4 223 68.6
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 1.6e-73 280.0 216 67.6
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 1.6e-73 280.0 216 67.6
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 2.1e-73 279.6 203 71.4
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 2.1e-73 279.6 243 63.0
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 2.1e-73 279.6 208 68.8
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 2.1e-73 279.6 223 69.1
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 2.8e-73 279.3 232 65.5
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 2.8e-73 279.3 227 67.0
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 2.8e-73 279.3 210 69.0
Haze_05044 Corylus avellana HOM05D004658 ORTHO05D005927 4.8e-73 278.5 189 77.8
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 4.8e-73 278.5 205 70.2
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 8.2e-73 277.7 214 70.1
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 8.2e-73 277.7 227 64.8
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 1.4e-72 276.9 216 67.6
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 2.4e-72 276.2 225 66.7
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 5.3e-72 275.0 213 67.6
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 6.9e-72 274.6 223 66.4
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 6.9e-72 274.6 201 71.1
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 9.0e-72 274.2 223 65.9
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 9.0e-72 274.2 224 65.6
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 6.5e-70 268.1 192 73.4
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 3.2e-69 265.8 234 62.4
ClCG09G005080 Citrullus lanatus HOM05D004658 ORTHO05D005927 1.2e-68 263.8 184 71.7
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.6e-68 263.5 280 53.6
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 2.7e-68 262.7 221 62.0
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 6.1e-68 261.5 229 63.3
Sabra14G0089400 Salix brachista HOM05D004658 ORTHO05D005927 1.8e-67 260.0 194 68.6
Nitab4.5_0008277g0040 Nicotiana tabacum HOM05D004658 ORTHO05D005927 5.7e-66 255.0 223 64.1
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 5.7e-66 255.0 191 67.0
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 7.4e-66 254.6 220 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 1.3e-65 253.8 196 65.8
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 1.1e-64 250.8 213 61.5
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 1.8e-64 250.0 171 76.0
Haze_05045 Corylus avellana HOM05D004658 ORTHO05D005927 4.1e-64 248.8 179 73.2
SHI28963 Sapria himalayana HOM05D004658 ORTHO05D005927 4.1e-64 248.8 232 58.2
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 9.0e-64 247.7 198 62.6
SEGI_07403 Sequoiadendron giganteum HOM05D004658 ORTHO05D005927 1.5e-63 246.9 191 68.1
BcaC02g12572 Brassica carinata HOM05D004658 ORTHO05D005927 2.6e-63 246.1 193 66.8
BolC4t21687H Brassica oleracea HOM05D004658 ORTHO05D005927 2.6e-63 246.1 193 66.8
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 1.7e-62 243.4 234 56.0
CAN.G100.80 Capsicum annuum HOM05D004658 ORTHO05D005927 1.0e-59 234.2 184 69.0
Dinv33118 Davidia involucrata HOM05D004658 ORTHO05D005927 1.8e-59 233.4 161 74.5
C04p00510 Brassica napus HOM05D004658 ORTHO05D005927 3.8e-54 215.7 159 69.8
CBR_g25720 Chara braunii HOM05D005350 ORTHO05D008838 2.3e-51 206.5 199 54.3
C04p00490 Brassica napus HOM05D004658 ORTHO05D005927 5.3e-48 195.3 136 72.8
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 1.2e-47 194.1 197 51.8
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 2.6e-47 193.0 209 51.7
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 5.2e-43 178.7 198 49.5
Ciclev10000356m.g Citrus clementina HOM05D004658 ORTHO05D005927 3.7e-33 146.0 185 48.1
Actinidia21400 Actinidia chinensis HOM05D004658 ORTHO05D005927 8.8e-27 124.8 90 71.1
ECA232G2110 Erigeron canadensis HOM05D004658 ORTHO05D005927 1.1e-24 117.9 100 62.0
Cre14.g629102 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 1.1e-13 81.3 75 53.3
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-12 77.0 64 60.9
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 7.0e-08 62.0 194 27.3
PGR142G2368 Punica granatum HOM05D003117 ORTHO05D003612 2.0e-07 60.5 195 27.7
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 3.5e-07 59.7 192 26.0
Actinidia21399 Actinidia chinensis HOM05D004658 ORTHO05D005927 1.7e-06 57.4 42 61.9
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 3.0e-06 56.6 195 27.2
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 5.0e-06 55.8 43 60.5
Sed0002710 Sechium edule HOM05D003117 ORTHO05D003612 5.0e-06 55.8 196 27.0
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 5.0e-06 55.8 194 26.8
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 8.6e-06 55.1 195 27.2


User provided reference genes

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