Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005786 Carpinus fangiana HOM05D004590 ORTHO05D006056 6.7e-151 537.3 277 100.0
Haze_05055 Corylus avellana HOM05D004590 ORTHO05D006056 7.8e-123 444.1 277 84.8
QL12p019662 Quercus lobata HOM05D004590 ORTHO05D006056 2.8e-88 329.3 269 66.2
CiPaw.07G118200 Carya illinoinensis HOM05D004590 ORTHO05D006056 2.1e-83 313.2 273 66.3
Dinv10105 Davidia involucrata HOM05D004590 ORTHO05D006056 8.1e-80 301.2 257 65.0
CiPaw.07G118100 Carya illinoinensis HOM05D004590 ORTHO05D006056 2.0e-78 296.6 273 61.5
Prupe.8G266000 Prunus persica HOM05D004590 ORTHO05D006056 8.4e-77 291.2 268 60.8
Manes.01G228400 Manihot esculenta HOM05D004590 ORTHO05D006056 3.2e-76 289.3 257 59.5
CiPaw.08G089200 Carya illinoinensis HOM05D004590 ORTHO05D006056 9.3e-76 287.7 279 62.0
Manes.05G004200 Manihot esculenta HOM05D004590 ORTHO05D006056 2.7e-75 286.2 270 56.7
Atru.chr5.984 Acer truncatum HOM05D004590 ORTHO05D006056 4.6e-75 285.4 272 55.9
FAN18G0760 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.5e-73 280.4 287 56.4
Ciclev10021487m.g Citrus clementina HOM05D004590 ORTHO05D006056 1.9e-73 280.0 278 59.4
FAN04G1151 Fragaria x ananassa HOM05D004590 ORTHO05D001814 2.5e-73 279.6 287 56.1
FAN18G0138 Fragaria x ananassa HOM05D004590 ORTHO05D006056 4.3e-73 278.9 287 57.5
Thecc.01G314300 Theobroma cacao HOM05D004590 ORTHO05D006056 5.6e-73 278.5 270 57.0
COL.COLO4_23224 Corchorus olitorius HOM05D004590 ORTHO05D006056 3.1e-71 272.7 267 56.2
Potri.002G195400 Populus trichocarpa HOM05D004590 ORTHO05D006056 6.9e-71 271.6 253 58.5
Cpa.g.sc18.55 Carica papaya HOM05D004590 ORTHO05D006056 2.6e-70 269.6 265 55.8
Duzib133G0018 Durio zibethinus HOM05D004590 ORTHO05D006056 4.5e-70 268.9 269 55.4
Potri.014G119900 Populus trichocarpa HOM05D004590 ORTHO05D006056 4.5e-70 268.9 257 56.0
FAN08G1928 Fragaria x ananassa HOM05D004590 ORTHO05D006056 5.8e-70 268.5 288 54.9
Actinidia25853 Actinidia chinensis HOM05D004590 ORTHO05D006056 7.6e-70 268.1 253 58.9
Sabra14G0088900 Salix brachista HOM05D004590 ORTHO05D006056 2.2e-69 266.5 267 53.6
Eucgr.H01008 Eucalyptus grandis HOM05D004590 ORTHO05D006056 3.8e-69 265.8 263 57.0
TWI75G0806 Tripterygium wilfordii HOM05D004590 ORTHO05D006056 6.5e-69 265.0 277 52.3
Eucgr.L03092 Eucalyptus grandis HOM05D004590 ORTHO05D006056 1.9e-68 263.5 263 56.7
MD03G1293400 Malus domestica HOM05D004590 ORTHO05D006056 2.5e-68 263.1 267 55.8
Gorai.007G122400 Gossypium raimondii HOM05D004590 ORTHO05D006056 7.1e-68 261.5 274 55.5
vmacro02401 Vaccinium macrocarpon HOM05D004590 ORTHO05D006056 7.1e-68 261.5 257 57.2
Gohir.D08G050700 Gossypium hirsutum HOM05D004590 ORTHO05D006056 2.1e-67 260.0 260 53.1
Solyc01g079370.4 Solanum lycopersicum HOM05D004590 ORTHO05D001814 6.0e-67 258.5 277 50.5
Gohir.D11G113800 Gossypium hirsutum HOM05D004590 ORTHO05D006056 1.0e-66 257.7 274 55.5
Glyma.10G012400 Glycine max HOM05D004590 ORTHO05D006056 3.0e-66 256.1 255 57.6
Gorai.004G050300 Gossypium raimondii HOM05D004590 ORTHO05D006056 8.7e-66 254.6 260 52.7
Glyma.19G216900 Glycine max HOM05D004590 ORTHO05D006056 1.5e-65 253.8 266 56.0
Glyma.02G011900 Glycine max HOM05D004590 ORTHO05D006056 2.5e-65 253.1 249 57.0
Peaxi162Scf00691g00043 Petunia axillaris HOM05D004590 ORTHO05D006056 5.7e-65 251.9 278 50.0
CANSAT25G1025 Cannabis sativa HOM05D004590 ORTHO05D006056 1.3e-64 250.8 273 53.8
Sabra02G0161400 Salix brachista HOM05D004590 ORTHO05D006056 2.8e-64 249.6 254 54.3
Glyma.03G220000 Glycine max HOM05D004590 ORTHO05D006056 3.7e-64 249.2 270 53.3
Gohir.A08G040600 Gossypium hirsutum HOM05D004590 ORTHO05D006056 6.3e-64 248.4 260 51.9
Lalb_Chr02g0146851 Lupinus albus HOM05D004590 ORTHO05D006056 1.1e-63 247.7 278 54.0
PSO210G2446 Papaver somniferum HOM05D004590 ORTHO05D006056 2.4e-63 246.5 247 56.3
PSO761G0256 Papaver somniferum HOM05D004590 ORTHO05D006056 3.1e-63 246.1 247 56.3
VMungo0720G1332 Vigna mungo HOM05D004590 ORTHO05D006056 3.1e-63 246.1 271 54.2
Aqoxy5G02551 Aquilegia oxysepala HOM05D004590 ORTHO05D006056 1.2e-62 244.2 253 54.2
DCAR_002892 Daucus carota HOM05D004590 ORTHO05D006056 1.2e-62 244.2 257 54.5
Dinv10107 Davidia involucrata HOM05D004590 ORTHO05D006056 1.2e-62 244.2 253 55.3
Peaxi162Scf00058g02629 Petunia axillaris HOM05D004590 ORTHO05D006056 2.0e-62 243.4 256 52.3
Phvul.007G213800 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 2.6e-62 243.0 254 55.1
ECA247G0553 Erigeron canadensis HOM05D001902 ORTHO05D006056 5.9e-62 241.9 272 51.1
Ca_10279_v3 Cicer arietinum L. HOM05D004590 ORTHO05D006056 1.7e-61 240.4 271 51.3
PGR083G0375 Punica granatum HOM05D004590 ORTHO05D006056 5.0e-61 238.8 274 49.6
PGR044G0990 Punica granatum HOM05D004590 ORTHO05D006056 8.5e-61 238.0 271 51.3
SalBow2G1668 Salvia bowleyana HOM05D004590 ORTHO05D001814 1.4e-60 237.3 268 52.2
Lj1C16T8 Lonicera japonica HOM05D004590 ORTHO05D006056 2.5e-60 236.5 275 53.5
Lj5g0007000 Lotus japonicus HOM05D004590 ORTHO05D006056 3.2e-60 236.1 269 55.0
Phvul.001G213500 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 3.2e-60 236.1 265 52.8
VMungo1383G1848 Vigna mungo HOM05D004590 ORTHO05D006056 3.2e-60 236.1 256 53.5
Lsat_1_v5_gn_9_2700 Lactuca sativa HOM05D004590 ORTHO05D006056 9.3e-60 234.6 272 50.4
Sopen01g031150 Solanum pennellii HOM05D004590 ORTHO05D006056 9.3e-60 234.6 241 51.0
DCAR_018295 Daucus carota HOM05D004590 ORTHO05D006056 1.6e-59 233.8 268 48.9
Rhsim13G0004900 Rhododendron simsii HOM05D001902 ORTHO05D001973 3.6e-59 232.6 255 53.7
FAN13G0862 Fragaria x ananassa HOM05D004590 ORTHO05D001814 4.6e-59 232.3 288 50.3
Medtr7g109590 Medicago truncatula HOM05D004590 ORTHO05D006056 1.0e-58 231.1 269 52.8
Oeu008476.1 Olea europaea HOM05D004590 ORTHO05D006056 1.8e-58 230.3 204 58.3
Solyc06g009610.1 Solanum lycopersicum HOM05D004590 ORTHO05D001814 2.3e-58 229.9 262 46.6
Lj1g0007921 Lotus japonicus HOM05D004590 ORTHO05D006056 3.0e-58 229.6 267 52.8
Nitab4.5_0007407g0080 Nicotiana tabacum HOM05D004590 ORTHO05D001814 3.9e-58 229.2 256 50.4
Sopen06g004240 Solanum pennellii HOM05D004590 ORTHO05D001814 5.1e-58 228.8 244 48.8
Nitab4.5_0000363g0250 Nicotiana tabacum HOM05D004590 ORTHO05D001814 6.7e-58 228.4 255 50.2
Actinidia17904 Actinidia chinensis HOM05D004590 ORTHO05D006056 1.9e-57 226.9 266 52.3
HanXRQChr10g0285241 Helianthus annuus HOM05D004590 ORTHO05D006056 2.5e-57 226.5 278 48.2
Nn4g25589 Nelumbo nucifera HOM05D004590 ORTHO05D006056 1.6e-56 223.8 270 50.4
RcHm_v2.0_Chr7g0241061 Rosa chinensis HOM05D004590 ORTHO05D006056 1.6e-56 223.8 231 54.5
arahy.Tifrunner.gnm1.ann1.3K3C0B Arachis hypogaea HOM05D004590 ORTHO05D006056 2.2e-56 223.4 259 51.7
TPR.G4132 Trifolium pratense HOM05D004590 ORTHO05D006056 2.2e-56 223.4 269 50.2
Dinv33123 Davidia involucrata HOM05D004590 ORTHO05D006056 4.8e-56 222.2 208 62.0
Oeu043737.1 Olea europaea HOM05D004590 ORTHO05D006056 6.3e-56 221.9 204 56.4
Medtr1g086950 Medicago truncatula HOM05D004590 ORTHO05D006056 1.8e-55 220.3 259 49.8
PGSC0003DMG400007284 Solanum tuberosum HOM05D004590 ORTHO05D006056 2.4e-55 219.9 245 49.8
Psat6g161400 Pisum sativum HOM05D004590 ORTHO05D006056 1.5e-54 217.2 258 50.4
DCAR_012338 Daucus carota HOM05D004590 ORTHO05D006056 4.5e-54 215.7 251 49.8
Psat3g019440 Pisum sativum HOM05D004590 ORTHO05D006056 1.0e-53 214.5 271 48.0
Migut.N00771 Erythranthe guttata HOM05D004590 ORTHO05D006056 1.7e-53 213.8 287 47.4
Nitab4.5_0007087g0030 Nicotiana tabacum HOM05D004590 ORTHO05D001814 1.7e-53 213.8 260 47.7
TPR.G38694 Trifolium pratense HOM05D004590 ORTHO05D006056 2.2e-53 213.4 260 48.5
THA.LOC104802151 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 1.2e-51 207.6 286 45.5
Gohir.A11G109250 Gossypium hirsutum HOM05D004590 ORTHO05D006056 3.6e-51 206.1 223 54.3
PSO223G0035 Papaver somniferum HOM05D004590 ORTHO05D006056 2.3e-50 203.4 234 53.4
MELO3C017913.2 Cucumis melo HOM05D001902 ORTHO05D001973 3.0e-50 203.0 233 50.2
THA.LOC104815920 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 6.7e-50 201.8 265 42.3
Sed0021092 Sechium edule HOM05D004590 ORTHO05D006056 2.6e-49 199.9 245 47.3
MBI19_g07230_MAGBIO Magnolia biondii HOM05D004590 ORTHO05D006056 1.8e-47 193.7 265 42.3
Cc01_g21490 Coffea canephora HOM05D004590 ORTHO05D006056 2.6e-46 189.9 311 42.8
Thhalv10009368m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 1.7e-45 187.2 271 42.4
A05p00540 Brassica napus HOM05D004590 ORTHO05D006056 3.8e-45 186.0 275 43.6
BraA05t19052Z Brassica rapa HOM05D004590 ORTHO05D006056 1.1e-44 184.5 275 43.6
BcaB06g29451 Brassica carinata HOM05D004590 ORTHO05D006056 1.4e-44 184.1 271 43.9
Carub.0001s0163 Capsella rubella HOM05D004590 ORTHO05D006056 1.9e-44 183.7 249 42.6
CARHR142760 Cardamine hirsuta HOM05D004590 ORTHO05D006056 2.5e-44 183.3 280 43.9
AL1G11900 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 3.2e-44 183.0 267 42.3
BcaC02g12568 Brassica carinata HOM05D004590 ORTHO05D006056 4.2e-44 182.6 274 43.1
BolC4t21692H Brassica oleracea HOM05D004590 ORTHO05D006056 4.2e-44 182.6 274 43.1
CARHR001880 Cardamine hirsuta HOM05D004590 ORTHO05D006056 4.2e-44 182.6 269 41.6
AL4G46920 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 5.5e-44 182.2 268 44.4
BcaC02g06968 Brassica carinata HOM05D004590 ORTHO05D006056 7.2e-44 181.8 269 44.6
C04p72730 Brassica napus HOM05D004590 ORTHO05D006056 7.2e-44 181.8 269 44.6
BolC4t28754H Brassica oleracea HOM05D004590 ORTHO05D006056 7.2e-44 181.8 269 44.6
AT1G02570 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 1.2e-43 181.0 254 42.1
Sp4g29300 Schrenkiella parvula HOM05D004590 ORTHO05D006056 2.7e-43 179.9 270 44.4
C04p00580 Brassica napus HOM05D004590 ORTHO05D006056 3.6e-43 179.5 274 42.7
BcaB02g08783 Brassica carinata HOM05D004590 ORTHO05D006056 4.7e-43 179.1 274 43.4
AT2G47360 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 1.0e-42 177.9 269 43.5
BolC5t28912H Brassica oleracea HOM05D004590 ORTHO05D006056 1.0e-42 177.9 262 41.6
Thhalv10001759m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 1.0e-42 177.9 270 43.3
A03p25930 Brassica napus HOM05D004590 ORTHO05D006056 1.8e-42 177.2 263 43.3
C05p01300 Brassica napus HOM05D004590 ORTHO05D006056 1.8e-42 177.2 262 41.6
BraA03t11810Z Brassica rapa HOM05D004590 ORTHO05D006056 5.2e-42 175.6 263 43.0
ClCG10G011450 Citrullus lanatus HOM05D004590 ORTHO05D006056 1.1e-41 174.5 265 42.3
A10p01300 Brassica napus HOM05D004590 ORTHO05D006056 1.5e-41 174.1 264 40.5
Eucgr.K03548 Eucalyptus grandis HOM05D004590 ORTHO05D006056 3.3e-41 172.9 252 43.7
Aa31LG1G9960 Aethionema arabicum HOM05D004590 ORTHO05D006056 7.4e-41 171.8 249 43.0
Sp1g01590 Schrenkiella parvula HOM05D004590 ORTHO05D006056 7.4e-41 171.8 260 41.2
ClCG09G005050 Citrullus lanatus HOM05D004590 ORTHO05D001814 1.3e-40 171.0 253 42.3
BcaB01g03170 Brassica carinata HOM05D004590 ORTHO05D006056 2.2e-40 170.2 263 43.7
BolC3t15444H Brassica oleracea HOM05D004590 ORTHO05D006056 2.2e-40 170.2 271 42.4
Migut.N00928 Erythranthe guttata HOM05D004590 ORTHO05D006056 3.7e-40 169.5 264 43.9
BraA10t42408Z Brassica rapa HOM05D004590 ORTHO05D006056 4.8e-40 169.1 260 40.8
AL251U10010 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.6e-38 163.3 286 42.3
CsaV3_7G030000 Cucumis sativus L. HOM05D004590 ORTHO05D006056 2.6e-38 163.3 245 42.0
Sed0006535 Sechium edule HOM05D004590 ORTHO05D006056 5.9e-38 162.2 245 41.2
MD03G1293600 Malus domestica HOM05D004590 ORTHO05D006056 7.7e-38 161.8 101 70.3
MELO3C015920.2 Cucumis melo HOM05D004590 ORTHO05D006056 3.8e-37 159.5 245 40.8
RcHm_v2.0_Chr7g0241031 Rosa chinensis HOM05D004590 ORTHO05D006056 8.5e-37 158.3 103 68.0
SalBow3G0071 Salvia bowleyana HOM05D004590 ORTHO05D006056 1.9e-36 157.1 252 44.4
SalBow3G0439 Salvia bowleyana HOM05D004590 ORTHO05D006056 1.9e-36 157.1 252 44.4
C03p30930 Brassica napus HOM05D004590 ORTHO05D006056 9.4e-36 154.8 267 41.2
PSO210G1746 Papaver somniferum HOM05D004590 ORTHO05D006056 3.6e-35 152.9 165 44.8
CANSAT25G2756 Cannabis sativa HOM05D004590 ORTHO05D006056 8.0e-35 151.8 275 39.6
BcaB03g15770 Brassica carinata HOM05D004590 ORTHO05D006056 1.8e-34 150.6 259 38.2
AT1G02575 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 1.4e-31 141.0 244 38.9
Aa31LG10G16310 Aethionema arabicum HOM05D004590 ORTHO05D006056 4.1e-31 139.4 259 39.0
Actinidia20991 Actinidia chinensis HOM05D000063 ORTHO05D001814 1.2e-30 137.9 115 60.9
Nitab4.5_0003540g0150 Nicotiana tabacum HOM05D004590 ORTHO05D006056 3.5e-30 136.3 112 54.5
AL5G45160 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 1.9e-28 130.6 210 44.3
HPP92_001238 Vanilla planifolia HOM05D004590 ORTHO05D006056 1.2e-27 127.9 257 37.0
EL10As5g23540 Beta vulgaris HOM05D004590 ORTHO05D006056 8.0e-27 125.2 118 50.8
THA.LOC104801571 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 3.7e-24 116.3 174 37.4
Lalb_Chr21g0309621 Lupinus albus HOM05D004590 ORTHO05D006056 2.0e-22 110.5 165 49.7
BcaC02g09006 Brassica carinata HOM05D004590 ORTHO05D006056 1.3e-21 107.8 139 45.3
BolC4t25517H Brassica oleracea HOM05D004590 ORTHO05D006056 1.3e-21 107.8 139 45.3
SGA_v2.0_scaffold198G41121 Striga asiatica HOM05D004590 ORTHO05D006056 5.5e-20 102.4 164 46.3
Carub.0004s3008 Capsella rubella HOM05D004590 ORTHO05D006056 1.6e-19 100.9 124 42.7
SalBow3G0261 Salvia bowleyana HOM05D004590 ORTHO05D006056 2.8e-19 100.1 247 34.0
FAN18G1107 Fragaria x ananassa HOM05D004590 ORTHO05D006056 9.8e-17 91.7 63 63.5
C04p39520 Brassica napus HOM05D004590 ORTHO05D006056 8.3e-16 88.6 114 44.7
Hma1.2p1_0408F.1_g146640 Hydrangea macrophylla HOM05D004590 ORTHO05D006056 1.6e-14 84.3 69 56.5
BcaC01g05033 Brassica carinata HOM05D004590 ORTHO05D006056 5.2e-10 69.3 121 44.6
THA.LOC104825938 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 5.9e-06 55.8 200 25.5


User provided reference genes

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