Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 3.5e-65 251.5 133 100.0
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 5.0e-51 204.5 133 87.2
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 1.4e-29 133.3 149 59.7
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 4.1e-29 131.7 155 58.1
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 8.3e-22 107.5 120 55.8
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.6e-20 103.2 141 53.2
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.5e-18 96.7 144 51.4
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.5e-18 96.7 140 47.9
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.5e-18 96.7 139 49.6
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 2.5e-18 95.9 92 60.9
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 6.1e-17 91.3 92 58.7
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 6.1e-17 91.3 136 47.1
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 2.3e-16 89.4 132 43.9
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 4.0e-16 88.6 147 42.9
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 4.0e-16 88.6 83 59.0
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 4.0e-16 88.6 137 48.9
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 5.2e-16 88.2 93 50.5
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 5.2e-16 88.2 135 48.1
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 6.8e-16 87.8 134 47.0
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 6.8e-16 87.8 83 60.2
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 8.9e-16 87.4 139 47.5
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 4.4e-15 85.1 129 48.1
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 5.7e-15 84.7 136 42.6
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 7.5e-15 84.3 137 44.5
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 7.5e-15 84.3 137 44.5
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 2.2e-14 82.8 137 44.5
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 4.9e-14 81.6 137 45.3
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 6.3e-14 81.3 64 67.2
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 8.3e-14 80.9 137 44.5
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 8.3e-14 80.9 83 54.2
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 1.1e-13 80.5 100 50.0
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 1.4e-13 80.1 85 51.8
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 1.4e-13 80.1 142 46.5
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 2.4e-13 79.3 142 44.4
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 2.4e-13 79.3 78 61.5
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 4.1e-13 78.6 133 45.9
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 4.1e-13 78.6 144 43.8
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 5.4e-13 78.2 72 61.1
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 7.0e-13 77.8 139 41.7
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 9.2e-13 77.4 91 49.5
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 1.2e-12 77.0 89 51.7
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 1.2e-12 77.0 77 62.3
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 1.6e-12 76.6 143 41.3
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.6e-12 76.6 143 41.3
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 1.6e-12 76.6 76 57.9
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 2.7e-12 75.9 134 44.0
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 4.5e-12 75.1 123 42.3
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 7.8e-12 74.3 140 42.1
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 7.8e-12 74.3 79 54.4
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 7.8e-12 74.3 135 41.5
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 1.3e-11 73.6 100 41.0
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 1.7e-11 73.2 82 53.7
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 2.3e-11 72.8 72 48.6
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 2.3e-11 72.8 72 48.6
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 2.3e-11 72.8 72 48.6
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 2.3e-11 72.8 80 46.2
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 2.9e-11 72.4 54 63.0
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 2.9e-11 72.4 106 46.2
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.9e-11 72.4 77 54.5
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 2.9e-11 72.4 61 62.3
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 3.9e-11 72.0 95 49.5
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 3.9e-11 72.0 81 48.1
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 3.9e-11 72.0 63 57.1
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 6.6e-11 71.2 89 44.9
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 8.6e-11 70.9 79 55.7
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 8.6e-11 70.9 72 47.2
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 1.1e-10 70.5 123 43.1
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.5e-10 70.1 135 45.2
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 1.9e-10 69.7 68 51.5
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 1.9e-10 69.7 72 45.8
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 1.9e-10 69.7 72 45.8
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 1.9e-10 69.7 83 54.2
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.9e-10 69.7 77 51.9
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 2.5e-10 69.3 91 47.3
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 4.3e-10 68.6 92 44.6
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 4.3e-10 68.6 95 42.1
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 5.6e-10 68.2 72 44.4
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 7.3e-10 67.8 72 54.2
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 7.3e-10 67.8 72 44.4
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 7.3e-10 67.8 96 41.7
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 7.3e-10 67.8 129 40.3
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 9.5e-10 67.4 72 44.4
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 9.5e-10 67.4 72 44.4
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 9.5e-10 67.4 72 44.4
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 9.5e-10 67.4 72 45.8
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 9.5e-10 67.4 62 54.8
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 1.2e-09 67.0 72 44.4
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 1.6e-09 66.6 88 48.9
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.6e-09 66.6 135 44.4
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 1.6e-09 66.6 93 43.0
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 2.1e-09 66.2 100 43.0
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 2.1e-09 66.2 71 52.1
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 2.1e-09 66.2 75 54.7
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 2.8e-09 65.9 113 41.6
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 3.6e-09 65.5 69 44.9
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 3.6e-09 65.5 75 49.3
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 3.6e-09 65.5 79 46.8
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 4.7e-09 65.1 91 44.0
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 6.1e-09 64.7 85 49.4
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 6.1e-09 64.7 131 34.4
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 6.1e-09 64.7 73 45.2
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 8.0e-09 64.3 83 47.0
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 8.0e-09 64.3 85 48.2
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 1.0e-08 63.9 73 45.2
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 1.0e-08 63.9 73 45.2
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 1.0e-08 63.9 84 44.0
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 1.4e-08 63.5 72 41.7
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 1.4e-08 63.5 92 43.5
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 3.1e-08 62.4 73 43.8
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 3.1e-08 62.4 70 48.6
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 3.1e-08 62.4 101 42.6
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 6.8e-08 61.2 74 41.9
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 6.8e-08 61.2 78 44.9
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 1.2e-07 60.5 53 56.6
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 1.2e-07 60.5 133 38.3
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 1.2e-07 60.5 137 34.3
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 1.2e-07 60.5 117 38.5
Sed0005978 Sechium edule HOM05D024969 ORTHO05D025069 1.2e-07 60.5 140 35.7
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 1.5e-07 60.1 124 40.3
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 1.5e-07 60.1 73 42.5
Sed0010162 Sechium edule HOM05D024969 ORTHO05D025069 2.0e-07 59.7 150 35.3
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 2.0e-07 59.7 73 42.5
Gohir.A04G137350 Gossypium hirsutum HOM05D034510 ORTHO05D008112 4.4e-07 58.5 101 33.7
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 5.8e-07 58.2 62 48.4
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 1.7e-06 56.6 79 44.3
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 2.2e-06 56.2 67 47.8
Gohir.D04G180550 Gossypium hirsutum HOM05D034510 ORTHO05D047560 3.7e-06 55.5 92 33.7
Gorai.012G173700 Gossypium raimondii HOM05D034510 ORTHO05D047560 3.7e-06 55.5 92 33.7


User provided reference genes

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