Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 9.6e-89 330.1 162 100.0
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.8e-39 166.4 97 89.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.1e-36 157.1 109 76.1
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.4e-36 156.8 111 70.3
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.9e-36 156.4 111 72.1
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.5e-36 156.0 111 69.4
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 4.2e-36 155.2 112 75.0
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 9.4e-36 154.1 111 69.4
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.1e-35 152.9 108 68.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 2.7e-35 152.5 113 69.0
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.7e-35 152.5 114 69.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 2.7e-35 152.5 114 69.3
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.7e-35 152.5 109 73.4
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.6e-35 152.1 118 68.6
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.1e-35 151.4 110 71.8
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.0e-34 150.6 114 68.4
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.0e-34 150.6 105 69.5
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.0e-34 150.6 109 68.8
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.8e-34 149.8 104 71.2
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.8e-34 149.8 108 66.7
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 5.1e-34 148.3 106 69.8
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 5.1e-34 148.3 121 64.5
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 6.7e-34 147.9 114 67.5
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.7e-34 147.9 108 66.7
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 8.8e-34 147.5 109 71.6
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 8.8e-34 147.5 109 71.6
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 8.8e-34 147.5 109 71.6
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 8.8e-34 147.5 109 71.6
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.5e-33 146.7 115 64.3
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.0e-33 146.4 86 82.6
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 4.4e-33 145.2 107 68.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.7e-33 144.8 113 62.8
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.4e-33 144.4 104 72.1
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.3e-32 143.7 108 65.7
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.3e-32 143.7 108 65.7
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.3e-32 143.7 108 65.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.7e-32 143.3 105 66.7
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.7e-32 143.3 105 66.7
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.2e-32 142.9 90 75.6
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 3.7e-32 142.1 103 66.0
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 3.7e-32 142.1 97 72.2
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.7e-32 142.1 96 72.9
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 4.8e-32 141.7 102 67.6
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 6.3e-32 141.4 103 67.0
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 6.3e-32 141.4 103 67.0
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 6.3e-32 141.4 103 67.0
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.3e-32 141.4 83 77.1
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.3e-32 141.4 108 65.7
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 8.2e-32 141.0 103 65.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 8.2e-32 141.0 106 66.0
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.1e-31 140.6 120 59.2
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.4e-31 140.2 113 63.7
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.4e-31 140.2 89 73.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.4e-31 140.2 103 71.8
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.4e-31 140.2 109 65.1
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.8e-31 139.8 103 65.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 2.4e-31 139.4 103 65.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.4e-31 139.4 89 76.4
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.4e-31 139.4 89 76.4
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.1e-31 138.7 85 74.1
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 4.1e-31 138.7 114 63.2
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 5.3e-31 138.3 112 65.2
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 5.3e-31 138.3 109 70.6
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 7.0e-31 137.9 110 63.6
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 7.0e-31 137.9 112 64.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.2e-30 137.1 96 68.8
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.2e-30 137.1 108 64.8
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.6e-30 136.7 103 63.1
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.6e-30 136.7 106 64.2
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.6e-30 136.7 106 64.2
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.0e-30 136.3 94 70.2
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 2.6e-30 136.0 88 75.0
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 3.5e-30 135.6 108 61.1
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 5.9e-30 134.8 85 75.3
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 5.9e-30 134.8 83 71.1
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 5.9e-30 134.8 108 63.9
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 7.7e-30 134.4 83 69.9
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.0e-29 134.0 122 61.5
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.3e-29 133.7 95 66.3
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.7e-29 133.3 90 68.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 2.2e-29 132.9 114 66.7
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.2e-29 132.9 108 62.0
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.2e-29 132.9 115 59.1
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 2.9e-29 132.5 108 59.3
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.9e-29 132.5 108 59.3
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.9e-29 132.5 113 59.3
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 3.8e-29 132.1 110 61.8
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 5.0e-29 131.7 118 57.6
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 5.0e-29 131.7 87 69.0
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 5.0e-29 131.7 110 61.8
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 6.5e-29 131.3 115 60.9
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 6.5e-29 131.3 95 65.3
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 6.5e-29 131.3 93 72.0
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 6.5e-29 131.3 93 69.9
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 8.5e-29 131.0 108 63.9
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.5e-29 131.0 110 62.7
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.1e-28 130.6 89 70.8
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.5e-28 130.2 95 66.3
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.5e-28 130.2 113 61.1
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.5e-28 130.2 124 58.1
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.5e-28 129.4 89 65.2
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.2e-28 129.0 106 59.4
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 5.5e-28 128.3 119 58.0
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.2e-28 127.9 84 73.8
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 9.4e-28 127.5 88 67.0
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.4e-28 127.5 114 61.4
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-27 127.1 103 60.2
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.6e-27 126.7 114 60.5
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.6e-27 126.7 114 59.6
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.1e-27 126.3 83 73.5
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.1e-27 126.3 104 62.5
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.7e-27 125.9 129 55.0
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 3.6e-27 125.6 114 58.8
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 4.7e-27 125.2 109 61.5
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 4.7e-27 125.2 109 61.5
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 4.7e-27 125.2 114 58.8
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 8.0e-27 124.4 103 66.0
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 8.0e-27 124.4 89 70.8
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.4e-26 123.6 85 71.8
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 3.0e-26 122.5 95 60.0
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 6.7e-26 121.3 134 54.5
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 8.8e-26 120.9 99 62.6
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.5e-25 120.2 114 57.9
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.6e-25 119.4 87 64.4
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 2.6e-25 119.4 87 62.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.3e-25 119.0 83 68.7
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.3e-25 119.0 135 52.6
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.7e-25 118.2 75 74.7
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.8e-24 115.9 110 54.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.5e-22 108.6 83 63.9
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.7e-22 107.8 102 55.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 3.8e-21 105.5 97 59.8
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.5e-20 103.6 83 56.6
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.0e-18 97.4 54 87.0
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.4e-18 97.1 103 48.5
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.0e-18 95.9 115 48.7
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 6.8e-18 94.7 106 51.9
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.4e-17 92.4 89 50.6
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.7e-16 89.0 89 50.6
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.7e-14 81.3 85 50.6
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.5e-12 75.1 45 75.6
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.0e-10 69.3 76 48.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.0e-10 69.3 59 52.5
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.5e-09 67.0 65 56.9
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 8.3e-08 61.2 45 66.7
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-07 60.8 116 37.1


User provided reference genes

Program Settings