Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 5.5e-65 251.1 157 100.0
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 2.5e-54 215.7 151 82.1
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 3.3e-54 215.3 154 79.2
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 4.3e-54 214.9 155 80.0
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 7.4e-54 214.2 151 81.5
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 1.3e-53 213.4 153 80.4
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 1.3e-53 213.4 153 80.4
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 1.3e-53 213.4 150 80.0
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 1.3e-53 213.4 152 81.6
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 1.1e-52 210.3 151 80.8
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 1.8e-52 209.5 157 77.1
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 2.4e-52 209.1 153 78.4
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 6.9e-52 207.6 151 79.5
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 9.1e-52 207.2 155 78.1
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 2.6e-51 205.7 157 85.4
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 3.4e-51 205.3 153 77.8
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 4.5e-51 204.9 155 76.8
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.7e-50 203.0 155 76.1
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 1.7e-50 203.0 158 75.3
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 2.2e-50 202.6 146 80.1
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.9e-50 202.2 155 75.5
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.9e-50 202.2 155 75.5
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 2.9e-50 202.2 152 79.6
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 3.8e-50 201.8 147 76.2
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 5.0e-50 201.4 152 77.0
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 8.5e-50 200.7 147 76.2
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 1.9e-49 199.5 154 75.3
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 1.9e-49 199.5 147 76.2
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 1.9e-49 199.5 149 76.5
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.5e-49 199.1 151 76.2
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 2.5e-49 199.1 153 74.5
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 2.5e-49 199.1 154 75.3
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 3.2e-49 198.7 154 74.0
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 4.2e-49 198.4 147 78.2
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 4.2e-49 198.4 155 74.8
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 5.5e-49 198.0 155 74.8
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 5.5e-49 198.0 147 77.6
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 7.2e-49 197.6 155 72.3
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 9.4e-49 197.2 155 76.1
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 2.1e-48 196.1 154 74.7
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 2.7e-48 195.7 147 85.0
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 3.6e-48 195.3 155 72.9
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 3.6e-48 195.3 148 76.4
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 4.6e-48 194.9 150 75.3
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 1.0e-47 193.7 149 74.5
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 1.4e-47 193.4 177 68.9
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 1.8e-47 193.0 154 72.7
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 2.3e-47 192.6 148 76.4
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 3.0e-47 192.2 151 71.5
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 3.0e-47 192.2 150 71.3
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 5.1e-47 191.4 154 72.1
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 8.8e-47 190.7 156 71.8
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 2.0e-46 189.5 157 70.1
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 2.0e-46 189.5 157 70.1
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 2.6e-46 189.1 151 72.8
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 9.7e-46 187.2 110 97.3
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 9.7e-46 187.2 147 73.5
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 9.7e-46 187.2 152 70.4
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 9.7e-46 187.2 155 69.7
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 1.3e-45 186.8 154 71.4
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 3.7e-45 185.3 153 69.3
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 3.7e-45 185.3 153 68.6
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 3.7e-45 185.3 153 69.3
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 3.7e-45 185.3 153 69.3
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 3.7e-45 185.3 155 69.7
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 4.8e-45 184.9 153 69.3
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 6.3e-45 184.5 110 95.5
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 8.2e-45 184.1 151 82.1
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 8.2e-45 184.1 155 70.3
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 1.1e-44 183.7 152 71.1
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 1.1e-44 183.7 155 69.7
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 1.8e-44 183.0 146 71.2
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 1.8e-44 183.0 153 68.0
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 1.8e-44 183.0 153 68.6
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 2.4e-44 182.6 154 67.5
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 2.4e-44 182.6 153 68.0
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 3.1e-44 182.2 153 69.3
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 3.1e-44 182.2 153 68.6
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 4.1e-44 181.8 153 68.0
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 6.9e-44 181.0 155 68.4
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 6.9e-44 181.0 144 70.8
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 6.9e-44 181.0 144 71.5
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 6.9e-44 181.0 144 71.5
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 1.2e-43 180.3 153 67.3
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 1.5e-43 179.9 135 77.8
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 1.5e-43 179.9 155 76.8
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 3.8e-42 175.3 153 66.0
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 5.0e-42 174.9 146 68.5
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 5.5e-41 171.4 147 66.0
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 9.4e-41 170.6 142 66.2
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 1.4e-39 166.8 146 64.4
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 1.8e-39 166.4 145 62.8
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 3.0e-39 165.6 146 76.7
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 6.7e-39 164.5 139 64.7
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.5e-38 163.3 156 73.7
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 4.4e-38 161.8 153 64.7
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 5.7e-38 161.4 153 71.9
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 2.4e-36 156.0 148 64.2
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 2.0e-35 152.9 108 79.6
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 4.5e-35 151.8 153 60.1
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 4.5e-35 151.8 105 81.9
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 1.7e-34 149.8 156 70.5
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.7e-34 149.8 158 69.0
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 5.0e-34 148.3 179 62.6
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 9.4e-33 144.1 143 58.7
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 2.1e-32 142.9 153 60.8
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 1.8e-31 139.8 155 68.4
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 8.8e-31 137.5 224 45.1
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 2.0e-30 136.3 108 70.4
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 5.7e-30 134.8 107 73.8
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 7.5e-30 134.4 156 65.4
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 7.5e-30 134.4 156 65.4
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 1.3e-29 133.7 107 70.1
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.7e-29 132.1 153 51.6
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 1.0e-26 124.0 100 67.0
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 1.1e-25 120.6 144 46.5
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 2.5e-25 119.4 109 63.3
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 5.5e-25 118.2 137 46.7
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 6.8e-23 111.3 126 67.5
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 1.5e-22 110.2 138 42.8
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.7e-21 105.5 91 65.9
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 9.1e-20 100.9 81 71.6
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 4.1e-12 75.5 66 63.6
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 7.8e-11 71.2 53 69.8
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 1.3e-10 70.5 127 51.2
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.9e-09 66.6 42 83.3
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 2.6e-06 56.2 147 33.3


User provided reference genes

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