Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 8.3e-24 112.8 56 100.0
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 7.3e-20 99.8 55 92.7
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 8.0e-19 96.3 55 89.1
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 3.4e-17 90.9 55 80.0
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 3.4e-17 90.9 55 81.8
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 5.8e-17 90.1 55 78.2
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 6.4e-16 86.7 55 76.4
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.4e-15 84.7 55 74.5
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 3.2e-15 84.3 55 74.5
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 4.1e-15 84.0 55 74.5
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 4.1e-15 84.0 55 72.7
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 5.4e-15 83.6 55 72.7
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 5.4e-15 83.6 55 72.7
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 9.2e-15 82.8 55 72.7
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.7e-14 81.3 55 70.9
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 3.5e-14 80.9 55 70.9
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 4.6e-14 80.5 55 76.4
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 4.6e-14 80.5 55 69.1
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 4.6e-14 80.5 55 70.9
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 4.6e-14 80.5 55 69.1
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 6.0e-14 80.1 55 69.1
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 6.0e-14 80.1 55 69.1
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 7.8e-14 79.7 56 71.4
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 7.8e-14 79.7 55 72.7
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.0e-13 79.3 55 70.9
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.3e-13 78.2 55 69.1
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.3e-13 78.2 55 69.1
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 2.3e-13 78.2 55 72.7
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.0e-13 77.8 55 74.5
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 3.0e-13 77.8 55 67.3
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.9e-13 77.4 55 69.1
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 6.6e-13 76.6 54 70.4
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 8.6e-13 76.3 55 65.5
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.1e-12 75.9 55 65.5
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.1e-12 75.9 55 69.1
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.1e-12 75.9 57 73.7
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.1e-12 75.9 57 73.7
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.1e-12 75.9 57 73.7
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.1e-12 75.9 57 73.7
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 1.1e-12 75.9 55 67.3
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 1.1e-12 75.9 55 67.3
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.5e-12 75.5 55 65.5
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.5e-12 75.5 54 70.4
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.5e-12 75.5 55 69.1
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.9e-12 75.1 55 67.3
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.9e-12 75.1 54 70.4
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 2.5e-12 74.7 55 65.5
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 3.3e-12 74.3 55 65.5
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 3.3e-12 74.3 55 65.5
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 4.3e-12 73.9 55 63.6
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 4.3e-12 73.9 55 63.6
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 5.6e-12 73.6 57 71.9
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 5.6e-12 73.6 55 61.8
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 7.3e-12 73.2 55 65.5
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 9.5e-12 72.8 55 67.3
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 9.5e-12 72.8 55 65.5
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 9.5e-12 72.8 55 63.6
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.5e-12 72.8 55 65.5
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.2e-11 72.4 55 61.8
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.2e-11 72.4 55 65.5
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 1.6e-11 72.0 55 56.4
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 2.1e-11 71.6 55 63.6
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 2.8e-11 71.2 55 63.6
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 4.7e-11 70.5 58 65.5
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 8.0e-11 69.7 52 65.4
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 1.8e-10 68.6 55 65.5
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.3e-10 68.2 55 61.8
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.3e-10 68.2 52 63.5
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 3.1e-10 67.8 55 65.5
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.2e-10 67.0 55 60.0
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 5.2e-10 67.0 55 58.2
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 8.9e-10 66.2 55 60.0
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 8.9e-10 66.2 55 60.0
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 8.9e-10 66.2 55 56.4
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 1.5e-09 65.5 56 62.5
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 1.5e-09 65.5 56 62.5
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 4.4e-09 63.9 55 56.4
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 5.8e-09 63.5 55 54.5
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 7.5e-09 63.2 55 56.4
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.3e-08 62.4 56 58.9
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 1.7e-08 62.0 43 67.4
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 3.7e-08 60.8 54 53.7
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 6.4e-08 60.1 55 56.4
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 6.4e-08 60.1 55 56.4
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 8.3e-08 59.7 55 49.1
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 1.4e-07 58.9 55 52.7
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.9e-07 58.5 51 56.9
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 1.9e-07 58.5 54 53.7
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 1.9e-07 58.5 53 56.6
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 3.2e-07 57.8 54 53.7
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 3.2e-07 57.8 55 54.5
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 4.1e-07 57.4 54 53.7
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 4.1e-07 57.4 53 54.7
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 7.0e-07 56.6 54 51.9
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 7.0e-07 56.6 54 51.9
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 9.2e-07 56.2 54 51.9
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 9.2e-07 56.2 58 53.4
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 9.2e-07 56.2 54 51.9
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.6e-06 55.5 54 51.9
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 1.6e-06 55.5 54 53.7
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.6e-06 55.5 54 53.7
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.6e-06 55.5 54 51.9
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.6e-06 55.5 54 51.9
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 1.6e-06 55.5 53 52.8
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 2.1e-06 55.1 54 50.0
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.1e-06 55.1 52 51.9
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 2.1e-06 55.1 54 50.0
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 2.1e-06 55.1 55 43.6
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 2.7e-06 54.7 56 51.8
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 2.7e-06 54.7 54 51.9
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 2.7e-06 54.7 54 48.1
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.7e-06 54.7 54 51.9
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.5e-06 54.3 54 51.9
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.5e-06 54.3 54 51.9
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 3.5e-06 54.3 54 51.9
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 3.5e-06 54.3 54 51.9
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 3.5e-06 54.3 54 50.0
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 3.5e-06 54.3 54 51.9
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 4.6e-06 53.9 54 51.9
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 4.6e-06 53.9 54 51.9
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 4.6e-06 53.9 54 53.7
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 6.0e-06 53.5 55 50.9
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.0e-06 53.5 54 50.0
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 6.0e-06 53.5 54 50.0
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 7.8e-06 53.1 54 48.1
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 7.8e-06 53.1 54 50.0
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 7.8e-06 53.1 54 48.1
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 7.8e-06 53.1 54 50.0
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 7.8e-06 53.1 54 48.1
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 7.8e-06 53.1 54 48.1
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 7.8e-06 53.1 54 44.4
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 7.8e-06 53.1 54 44.4


User provided reference genes

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