Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005587 Carpinus fangiana HOM05D000448 ORTHO05D000291 6.4e-110 401.0 237 100.0
Cfa005586 Carpinus fangiana HOM05D000448 ORTHO05D000291 9.4e-85 317.4 240 83.8
Cfa021119 Carpinus fangiana HOM05D000448 ORTHO05D000291 9.8e-58 227.6 186 66.7
Cfa011047 Carpinus fangiana HOM05D000448 ORTHO05D000291 5.0e-46 188.7 203 56.7
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 8.0e-44 181.4 126 78.6
Haze_02875 Corylus avellana HOM05D000448 ORTHO05D000291 3.9e-38 162.5 112 78.6
CiPaw.06G009500 Carya illinoinensis HOM05D000448 ORTHO05D000291 6.6e-30 135.2 155 51.0
Cfa005588 Carpinus fangiana HOM05D000448 ORTHO05D000291 8.6e-30 134.8 123 63.4
Potri.014G050600 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.6e-28 130.6 149 48.3
CiPaw.06G009000 Carya illinoinensis HOM05D000448 ORTHO05D000291 3.1e-27 126.3 156 49.4
Potri.014G050700 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.2e-26 124.4 163 43.6
Sabra14G0036000 Salix brachista HOM05D000448 ORTHO05D000291 1.7e-25 120.6 156 42.9
Duzib268G1481 Durio zibethinus HOM05D000448 ORTHO05D000291 1.9e-24 117.1 127 50.4
QL04p028978 Quercus lobata HOM05D000448 ORTHO05D000291 6.0e-23 112.1 143 45.5
Thecc.01G399600 Theobroma cacao HOM05D000448 ORTHO05D000291 7.8e-23 111.7 127 49.6
Thecc.01G399700 Theobroma cacao HOM05D000448 ORTHO05D000291 7.8e-23 111.7 127 48.8
Thecc.01G398500 Theobroma cacao HOM05D000448 ORTHO05D000291 1.0e-22 111.3 127 48.8
QL04p028865 Quercus lobata HOM05D000448 ORTHO05D000291 2.3e-22 110.2 170 40.0
COL.COLO4_12381 Corchorus olitorius HOM05D000448 ORTHO05D000291 5.1e-22 109.0 126 46.0
Duzib138G0994 Durio zibethinus HOM05D000480 ORTHO05D000291 5.1e-22 109.0 134 46.3
COL.COLO4_12382 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.9e-21 107.1 127 48.0
CiPaw.13G024500 Carya illinoinensis HOM05D000448 ORTHO05D000291 4.3e-21 105.9 134 46.3
Hma1.2p1_1623F.1_g294110 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 4.3e-21 105.9 123 48.8
Hma1.2p1_2969F.1_g331020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 4.3e-21 105.9 123 48.8
Manes.05G056601 Manihot esculenta HOM05D000448 ORTHO05D000291 5.6e-21 105.5 125 48.0
Manes.05G056701 Manihot esculenta HOM05D000448 ORTHO05D000291 2.1e-20 103.6 125 48.8
RcHm_v2.0_Chr1g0345971 Rosa chinensis HOM05D000448 ORTHO05D000291 2.1e-20 103.6 126 47.6
Sabra14G0052400 Salix brachista HOM05D000448 ORTHO05D000291 2.1e-20 103.6 126 47.6
FAN10G1399 Fragaria x ananassa HOM05D000448 ORTHO05D000291 4.7e-20 102.4 149 45.0
RcHm_v2.0_Chr5g0006001 Rosa chinensis HOM05D000448 ORTHO05D000291 6.2e-20 102.1 124 47.6
FvH4_7g09310 Fragaria vesca HOM05D000448 ORTHO05D000291 8.1e-20 101.7 149 45.0
FAN06G3977 Fragaria x ananassa HOM05D000448 ORTHO05D000291 8.1e-20 101.7 149 45.0
FAN03G3153 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.4e-19 100.9 145 44.8
QL04p028833 Quercus lobata HOM05D000448 ORTHO05D000291 1.4e-19 100.9 125 42.4
GSVIVG01018305001 Vitis vinifera HOM05D000448 ORTHO05D000291 1.4e-19 100.9 125 48.8
Sabra14G0038200 Salix brachista HOM05D000448 ORTHO05D000291 1.8e-19 100.5 128 43.0
Gohir.A12G098066 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.4e-19 100.1 126 43.7
Gorai.008G110300 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.4e-19 100.1 126 43.7
QL04p028761 Quercus lobata HOM05D000448 ORTHO05D000291 2.4e-19 100.1 147 39.5
QL04p028951 Quercus lobata HOM05D000448 ORTHO05D000291 2.4e-19 100.1 139 41.0
CANSAT25G1737 Cannabis sativa HOM05D000448 ORTHO05D000291 4.0e-19 99.4 122 45.1
QL04p028764 Quercus lobata HOM05D000448 ORTHO05D000291 4.0e-19 99.4 130 46.2
GSVIVG01018306001 Vitis vinifera HOM05D000448 ORTHO05D000291 4.0e-19 99.4 122 48.4
Dinv44044 Davidia involucrata HOM05D000448 ORTHO05D000291 5.2e-19 99.0 127 48.0
Prupe.2G121500 Prunus persica HOM05D000448 ORTHO05D000291 5.2e-19 99.0 124 46.0
PGR004G2034 Punica granatum HOM05D000448 ORTHO05D000291 5.2e-19 99.0 127 45.7
Gohir.D12G101250 Gossypium hirsutum HOM05D000448 ORTHO05D000291 6.8e-19 98.6 126 42.9
Glyma.18G247600 Glycine max HOM05D000448 ORTHO05D000291 8.9e-19 98.2 134 42.5
Eucgr.D01263 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.2e-18 97.8 121 44.6
Gohir.A12G098000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.2e-18 97.8 122 44.3
Gohir.D12G101100 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.2e-18 97.8 123 44.7
Gorai.008G110100 Gossypium raimondii HOM05D000448 ORTHO05D000291 1.2e-18 97.8 123 44.7
QL04p028629 Quercus lobata HOM05D000448 ORTHO05D000291 1.2e-18 97.8 130 45.4
Sabra14G0035900 Salix brachista HOM05D000448 ORTHO05D000291 1.2e-18 97.8 125 46.4
Gorai.008G109800 Gossypium raimondii HOM05D000448 ORTHO05D000291 1.5e-18 97.4 133 42.9
Nn1g06104 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.5e-18 97.4 127 41.7
QL04p028636 Quercus lobata HOM05D000448 ORTHO05D000291 1.5e-18 97.4 151 39.7
Cfa011049 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.0e-18 97.1 127 43.3
QL04p028825 Quercus lobata HOM05D000448 ORTHO05D000291 2.0e-18 97.1 171 36.3
Gorai.008G110200 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.6e-18 96.7 126 43.7
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.4e-18 95.9 125 43.2
Gohir.A12G097900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.4e-18 95.9 133 42.9
Glyma.18G247650 Glycine max HOM05D000448 ORTHO05D000291 5.8e-18 95.5 134 40.3
Gohir.D12G100900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.8e-18 95.5 133 42.1
Potri.001G443600 Populus trichocarpa HOM05D000448 ORTHO05D000291 9.9e-18 94.7 119 47.1
Potri.001G444300 Populus trichocarpa HOM05D000448 ORTHO05D000291 9.9e-18 94.7 119 47.1
CiPaw.13G024700 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.3e-17 94.4 127 44.9
PGR004G0201 Punica granatum HOM05D000448 ORTHO05D000291 1.3e-17 94.4 127 44.9
QL04p028872 Quercus lobata HOM05D000448 ORTHO05D000291 1.3e-17 94.4 101 47.5
QL04p028789 Quercus lobata HOM05D000448 ORTHO05D000291 1.7e-17 94.0 150 39.3
Sabra14G0038000 Salix brachista HOM05D000448 ORTHO05D000291 2.2e-17 93.6 119 49.6
Thecc.06G183100 Theobroma cacao HOM05D000448 ORTHO05D000291 2.2e-17 93.6 136 42.6
Potri.014G050532 Populus trichocarpa HOM05D000448 ORTHO05D000291 2.9e-17 93.2 119 47.1
Nn5g28713 Nelumbo nucifera HOM05D000448 ORTHO05D000291 3.8e-17 92.8 121 42.1
Potri.014G050800 Populus trichocarpa HOM05D000448 ORTHO05D000291 3.8e-17 92.8 151 38.4
Sabra14G0038100 Salix brachista HOM05D000448 ORTHO05D000291 3.8e-17 92.8 127 44.9
QL04p028736 Quercus lobata HOM05D000448 ORTHO05D000291 4.9e-17 92.4 112 48.2
Rhsim01G0141700 Rhododendron simsii HOM05D000448 ORTHO05D000291 4.9e-17 92.4 119 42.9
Nn7g38168 Nelumbo nucifera HOM05D000448 ORTHO05D000291 6.4e-17 92.0 121 43.8
Thecc.01G399400 Theobroma cacao HOM05D000448 ORTHO05D000291 6.4e-17 92.0 128 43.8
Duzib133G0800 Durio zibethinus HOM05D000448 ORTHO05D000291 1.4e-16 90.9 127 42.5
Thecc.01G399200 Theobroma cacao HOM05D000448 ORTHO05D000291 1.4e-16 90.9 128 44.5
PGR004G2256 Punica granatum HOM05D000448 ORTHO05D000291 1.9e-16 90.5 129 43.4
Nn1g06105 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.4e-16 90.1 122 41.0
Dinv39594 Davidia involucrata HOM05D000448 ORTHO05D000291 4.2e-16 89.4 140 38.6
Gohir.D12G101000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.4e-16 89.0 131 41.2
Gorai.008G109900 Gossypium raimondii HOM05D000448 ORTHO05D000291 5.4e-16 89.0 131 41.2
Gohir.D12G096850 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.2e-15 87.8 113 44.2
Eucgr.L02828 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.7e-15 86.7 128 44.5
Gohir.D12G101200 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.7e-15 86.7 127 40.9
Oeu011248.1 Olea europaea HOM05D000448 ORTHO05D000291 7.8e-15 85.1 127 41.7
Thecc.01G398400 Theobroma cacao HOM05D000448 ORTHO05D000291 7.8e-15 85.1 128 43.0
Thecc.01G399100 Theobroma cacao HOM05D000448 ORTHO05D000291 2.3e-14 83.6 134 41.0
Gohir.A12G097950 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.1e-14 82.4 133 36.1
Dinv39592 Davidia involucrata HOM05D000448 ORTHO05D000291 1.1e-13 81.3 180 32.8
Gohir.A12G098033 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.5e-13 80.9 126 38.9
Phvul.008G049700 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 7.3e-13 78.6 134 35.8
Potri.014G050900 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.6e-12 77.4 136 37.5
Cfa017263 Carpinus fangiana HOM05D000448 ORTHO05D000291 4.8e-12 75.9 99 42.4
CiPaw.16G039100 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.0e-10 70.5 114 36.0
VMungo1383G0936 Vigna mungo HOM05D000448 ORTHO05D000291 4.4e-10 69.3 124 34.7
Nn7g38091 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.3e-09 67.8 144 31.9
Cfa011048 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.8e-09 66.2 79 46.8
RcHm_v2.0_Chr2g0133631 Rosa chinensis HOM05D000448 ORTHO05D000291 1.9e-08 63.9 130 31.5
Sabra16G0198100 Salix brachista HOM05D000448 ORTHO05D000291 3.2e-08 63.2 145 33.1
Hma1.2p1_0632F.1_g192470 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.2e-07 61.2 138 31.9
Sabra16G0198000 Salix brachista HOM05D000448 ORTHO05D000291 1.6e-07 60.8 141 32.6
Actinidia21630 Actinidia chinensis HOM05D000480 ORTHO05D000313 2.1e-07 60.5 148 29.7
Migut.B01505 Erythranthe guttata HOM05D000480 ORTHO05D000313 2.1e-07 60.5 69 49.3
AUR62007589 Chenopodium quinoa HOM05D000480 ORTHO05D000313 2.7e-07 60.1 112 32.1
FAN23G0799 Fragaria x ananassa HOM05D000007 ORTHO05D005026 3.5e-07 59.7 166 28.3
CAN.G1585.3 Capsicum annuum HOM05D000480 ORTHO05D000313 6.0e-07 58.9 121 30.6
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 7.9e-07 58.5 100 35.0
Manes.08G063800 Manihot esculenta HOM05D000480 ORTHO05D000313 7.9e-07 58.5 146 29.5
TAR375G0007 Trochodendron aralioides HOM05D000448 ORTHO05D000291 1.0e-06 58.2 127 33.9
CiPaw.16G063100 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.3e-06 57.8 118 36.4
Eucgr.D01213 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.3e-06 57.8 80 42.5
SalBow5G3292 Salvia bowleyana HOM05D000480 ORTHO05D000313 1.3e-06 57.8 132 31.1
SalBow5G3723 Salvia bowleyana HOM05D000480 ORTHO05D000313 1.3e-06 57.8 132 31.1
Lsat_1_v5_gn_5_78760 Lactuca sativa HOM05D000448 ORTHO05D000291 1.7e-06 57.4 147 33.3
Potri.014G051100 Populus trichocarpa HOM05D000448 ORTHO05D000313 1.7e-06 57.4 146 29.5
QL08p060537 Quercus lobata HOM05D000448 ORTHO05D000291 1.7e-06 57.4 130 30.0
Actinidia19328 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.3e-06 57.0 108 32.4
Nn1g09256 Nelumbo nucifera HOM05D000480 ORTHO05D000313 2.3e-06 57.0 121 31.4
VMungo0720G1807 Vigna mungo HOM05D000448 ORTHO05D000291 2.3e-06 57.0 103 31.1
BcaC06g33524 Brassica carinata HOM05D000480 ORTHO05D000313 3.0e-06 56.6 125 36.0
BcaNung04661 Brassica carinata HOM05D000480 ORTHO05D000313 3.0e-06 56.6 125 36.0
FAN24G3054 Fragaria x ananassa HOM05D000448 ORTHO05D000291 3.0e-06 56.6 114 33.3
HanXRQChr12g0358831 Helianthus annuus HOM05D000448 ORTHO05D000291 3.0e-06 56.6 117 35.0
FvH4_1g05220 Fragaria vesca HOM05D000448 ORTHO05D000291 3.9e-06 56.2 148 28.4
QL08p060190 Quercus lobata HOM05D000448 ORTHO05D000291 3.9e-06 56.2 152 28.9
Thecc.01G399800 Theobroma cacao HOM05D000448 ORTHO05D000291 3.9e-06 56.2 147 29.3
TAR369G0196 Trochodendron aralioides HOM05D000448 ORTHO05D000291 3.9e-06 56.2 118 34.7
GSVIVG01024471001 Vitis vinifera HOM05D000480 ORTHO05D000313 3.9e-06 56.2 134 31.3
HanXRQChr01g0017701 Helianthus annuus HOM05D000480 ORTHO05D000313 6.6e-06 55.5 148 25.7
Nn7g38092 Nelumbo nucifera HOM05D000448 ORTHO05D000291 6.6e-06 55.5 148 29.7
BcaB01g01575 Brassica carinata HOM05D000480 ORTHO05D000313 8.7e-06 55.1 131 31.3
Nn2g15093 Nelumbo nucifera HOM05D000480 ORTHO05D000313 8.7e-06 55.1 124 32.3
Potri.012G113800 Populus trichocarpa HOM05D000480 ORTHO05D000313 8.7e-06 55.1 114 32.5
Sabra12G0082900 Salix brachista HOM05D000480 ORTHO05D000313 8.7e-06 55.1 137 30.7
Thecc.01G398600 Theobroma cacao HOM05D000480 ORTHO05D000313 8.7e-06 55.1 148 27.0


User provided reference genes

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