Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 5.6e-217 758.1 639 100.0
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 9.0e-199 697.6 642 95.5
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 1.1e-196 690.6 642 95.2
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 8.2e-152 541.6 646 85.0
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.2e-141 506.9 648 81.2
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 3.0e-138 496.5 653 82.1
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 4.1e-127 459.5 643 78.4
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 5.6e-124 449.1 645 77.7
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 1.4e-122 444.5 643 77.4
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.1e-122 443.4 642 77.4
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 2.0e-121 440.7 647 76.7
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 5.8e-121 439.1 644 77.0
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 2.7e-118 430.3 647 76.2
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.7e-117 427.6 647 75.0
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 3.0e-117 426.8 648 75.9
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 1.1e-116 424.9 646 75.7
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 1.2e-115 421.4 646 74.5
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 8.1e-115 418.7 647 74.8
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 5.8e-113 412.5 647 74.8
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.4e-111 407.1 647 73.6
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 7.1e-111 405.6 647 74.7
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.5e-110 403.3 642 74.9
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 4.6e-110 402.9 641 73.9
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.3e-109 400.6 648 73.1
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 7.3e-108 395.6 653 73.5
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 1.2e-107 394.8 641 73.2
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 2.1e-107 394.0 636 74.8
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 2.3e-106 390.6 641 73.3
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 5.2e-106 389.4 651 72.8
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 6.8e-106 389.0 640 74.2
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 4.4e-105 386.3 646 74.0
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 2.9e-104 383.6 658 72.3
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 3.8e-104 383.3 645 73.3
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 3.8e-104 383.3 645 73.0
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 4.1e-103 379.8 644 73.1
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 7.1e-103 379.0 649 73.2
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 7.8e-102 375.6 652 73.8
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 2.3e-101 374.0 641 73.0
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.1e-101 372.9 649 72.7
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.5e-100 371.3 651 73.0
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 3.3e-100 370.2 641 71.3
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 9.6e-100 368.6 630 73.3
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 9.6e-100 368.6 642 71.7
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.8e-99 367.1 648 73.0
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.2e-97 361.7 649 72.1
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.4e-97 360.1 647 71.6
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.1e-95 355.1 646 70.3
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 1.3e-93 348.2 639 70.7
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 8.1e-91 339.0 649 69.6
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 2.2e-88 330.9 643 69.8
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 2.2e-88 330.9 643 69.8
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 4.9e-88 329.7 646 69.2
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 4.2e-87 326.6 645 69.5
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 4.2e-87 326.6 647 70.3
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.1e-86 324.3 648 69.3
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 7.9e-86 322.4 591 74.6
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.3e-85 320.9 647 69.1
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.0e-85 320.5 626 70.8
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 6.7e-85 319.3 652 69.0
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 7.4e-84 315.8 586 75.4
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 9.6e-84 315.5 626 70.6
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.6e-83 314.7 589 72.5
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.6e-83 314.7 655 68.5
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 3.7e-83 313.5 641 68.5
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 8.1e-83 312.4 659 69.2
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 8.1e-83 312.4 659 69.2
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 8.1e-83 312.4 648 68.8
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 5.3e-82 309.7 646 67.0
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 5.3e-82 309.7 654 67.4
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 2.0e-81 307.8 648 68.7
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 5.5e-79 299.7 648 67.0
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.0e-78 296.2 641 68.3
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 8.7e-77 292.4 655 56.2
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.1e-76 292.0 621 68.4
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 2.5e-76 290.8 649 67.0
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 3.3e-76 290.4 624 68.4
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 7.4e-76 289.3 643 67.0
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 9.6e-76 288.9 624 68.4
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 4.0e-74 283.5 641 65.4
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 2.6e-73 280.8 649 68.6
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 1.4e-71 275.0 639 66.2
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 4.2e-71 273.5 654 67.1
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 1.6e-70 271.6 478 66.5
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.5e-70 270.4 637 65.9
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 1.3e-69 268.5 625 67.2
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 3.9e-69 266.9 647 64.5
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.5e-68 265.0 656 61.4
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.4e-66 258.5 654 64.1
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.1e-66 257.3 631 67.8
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 3.1e-66 257.3 657 64.7
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 1.2e-65 255.4 659 65.1
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.4e-65 253.8 635 66.5
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.4e-65 253.8 635 66.5
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 5.9e-65 253.1 257 58.4
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 2.2e-64 251.1 641 47.0
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.8e-64 250.4 641 64.1
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 3.9e-61 240.4 665 64.2
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 3.3e-60 237.3 259 51.7
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.2e-59 234.6 630 64.0
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 3.7e-59 233.8 657 65.1
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 9.1e-58 229.2 244 56.6
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 2.9e-56 224.2 653 62.5
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 7.9e-54 216.1 635 64.6
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.2e-51 208.0 651 61.1
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.8e-50 204.9 625 65.4
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.2e-49 202.2 653 61.9
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 1.5e-49 201.8 656 62.0
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 4.5e-49 200.3 642 62.5
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.3e-48 198.7 654 61.6
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 3.2e-47 194.1 231 76.2
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 9.4e-47 192.6 655 60.8
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 5.2e-45 186.8 657 60.7
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 6.7e-45 186.4 645 61.7
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 4.4e-44 183.7 652 60.6
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 5.7e-44 183.3 660 57.4
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.4e-42 178.7 652 60.9
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 9.1e-42 176.0 647 61.2
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 2.2e-40 171.4 648 61.1
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 3.8e-40 170.6 448 79.7
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 8.5e-40 169.5 645 61.2
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 3.2e-39 167.5 613 62.3
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 3.2e-39 167.5 613 62.3
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 4.2e-39 167.2 614 62.2
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 7.2e-39 166.4 650 58.9
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 5.2e-37 160.2 266 45.1
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 6.7e-37 159.8 613 62.0
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.5e-36 158.7 613 62.2
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 5.7e-36 156.8 647 58.4
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 5.0e-32 143.7 654 47.4
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 5.5e-31 140.2 636 59.9
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.2e-30 139.0 646 59.9
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 2.7e-30 137.9 438 63.5
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 1.2e-28 132.5 591 60.7
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.5e-28 132.1 628 58.9
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 3.4e-28 131.0 624 58.0
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.7e-27 128.6 622 58.0
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 4.5e-25 120.6 168 49.4
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 7.7e-25 119.8 601 60.4
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 3.8e-24 117.5 227 38.3
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 3.3e-23 114.4 245 40.0
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 4.2e-23 114.0 646 52.2
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 4.0e-21 107.5 627 57.9
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 4.0e-21 107.5 614 57.3
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 4.0e-21 107.5 617 48.0
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.2e-21 107.1 90 65.6
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 8.9e-21 106.3 627 57.9
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 1.2e-20 105.9 227 39.2
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.5e-20 105.5 146 46.6
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.0e-20 105.1 255 35.3
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 7.5e-20 103.2 638 57.2
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 2.7e-17 94.7 227 36.6
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 5.9e-17 93.6 219 37.4
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 7.8e-17 93.2 618 57.6
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 3.8e-16 90.9 220 37.7
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 1.9e-15 88.6 654 54.7
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.3e-15 87.4 78 62.8
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 9.5e-15 86.3 609 58.1
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-14 85.9 150 43.3
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.6e-14 85.5 196 36.2
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.1e-14 85.1 94 55.3
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 1.8e-13 82.0 248 32.3
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.8e-13 80.1 78 59.0
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 6.8e-13 80.1 168 38.1
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 2.0e-12 78.6 146 41.8
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 9.8e-12 76.3 610 43.9
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 9.8e-12 76.3 610 43.9
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 1.7e-11 75.5 232 30.2
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.9e-10 72.0 246 30.5
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.3e-08 65.9 124 41.9
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 3.9e-08 64.3 194 32.0
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 5.0e-08 63.9 123 39.0
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 5.0e-08 63.9 107 43.0
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.9e-07 62.0 269 30.9
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 9.5e-07 59.7 264 30.3
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-06 59.3 148 33.1
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.6e-06 58.9 246 28.5
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 2.8e-06 58.2 144 29.9
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 2.8e-06 58.2 203 30.5
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 3.6e-06 57.8 150 36.7
MBI05_g29100_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 6.2e-06 57.0 65 58.5
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 6.2e-06 57.0 145 29.0
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 8.0e-06 56.6 144 30.6
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 8.0e-06 56.6 143 34.3
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 8.0e-06 56.6 149 37.6


User provided reference genes

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