Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 2.0e-155 552.4 275 100.0
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 8.5e-122 440.7 282 83.3
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 6.8e-95 351.3 205 87.3
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 2.3e-79 299.7 318 55.0
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.7e-50 201.8 358 43.0
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.1e-49 201.1 333 41.7
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 3.3e-49 199.5 254 52.0
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 5.6e-49 198.7 238 51.3
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 5.6e-49 198.7 238 51.3
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 1.9e-44 183.7 237 48.1
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 3.2e-44 183.0 285 45.6
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 3.0e-42 176.4 313 40.9
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 3.0e-42 176.4 212 50.9
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 1.9e-41 173.7 298 44.3
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 8.2e-40 168.3 319 38.9
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 4.1e-39 166.0 338 38.2
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 3.4e-38 162.9 335 36.7
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 5.9e-38 162.2 274 40.1
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 1.7e-37 160.6 293 37.2
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 2.9e-37 159.8 238 42.4
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 6.5e-37 158.7 339 38.1
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.1e-36 157.9 343 35.9
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 1.4e-36 157.5 325 36.6
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 1.9e-36 157.1 240 41.7
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 7.2e-36 155.2 304 36.5
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 1.2e-35 154.5 290 39.0
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.6e-35 154.1 302 35.8
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 3.5e-35 152.9 302 35.8
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 4.6e-35 152.5 290 37.2
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 4.6e-35 152.5 301 37.2
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 6.1e-35 152.1 301 37.2
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 2.3e-34 150.2 284 41.9
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 2.3e-34 150.2 294 38.8
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 3.0e-34 149.8 340 36.5
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 1.1e-33 147.9 305 37.4
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 1.1e-33 147.9 294 41.5
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 3.3e-33 146.4 292 38.7
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 4.3e-33 146.0 330 34.2
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.3e-32 144.4 307 35.5
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 1.6e-32 144.1 285 36.1
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 2.8e-32 143.3 298 35.2
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 4.8e-32 142.5 170 51.2
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.4e-31 141.0 342 33.0
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 5.3e-31 139.0 323 34.1
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 9.0e-31 138.3 286 43.0
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 1.2e-30 137.9 270 41.5
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 1.5e-30 137.5 233 42.9
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 2.0e-30 137.1 229 38.9
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 2.6e-30 136.7 339 33.3
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 2.6e-30 136.7 279 37.3
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 5.9e-30 135.6 270 41.1
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 2.9e-29 133.3 319 35.7
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 8.5e-29 131.7 217 42.4
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.9e-28 130.6 210 38.6
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 7.2e-28 128.6 301 35.5
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 4.6e-27 125.9 263 39.9
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 1.0e-26 124.8 163 47.2
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 5.1e-26 122.5 311 34.1
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 8.8e-26 121.7 286 35.0
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 2.2e-24 117.1 247 36.8
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 4.1e-23 112.8 218 36.7
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 9.1e-23 111.7 263 35.0
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 1.2e-22 111.3 296 33.8
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 5.9e-22 109.0 317 30.6
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 5.9e-22 109.0 250 36.0
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 3.8e-21 106.3 328 31.7
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 1.4e-20 104.4 251 34.7
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 2.5e-20 103.6 194 37.1
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 3.2e-20 103.2 308 32.1
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 4.2e-20 102.8 271 33.2
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 3.0e-18 96.7 137 46.7
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 3.9e-18 96.3 145 43.4
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 8.8e-18 95.1 285 35.1
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 7.4e-17 92.0 112 50.0
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 8.2e-16 88.6 103 48.5
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 3.5e-14 83.2 305 31.5
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 1.9e-12 77.4 178 34.8
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 5.5e-12 75.9 172 36.0
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 1.6e-11 74.3 126 39.7
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 1.6e-11 74.3 126 39.7
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 8.0e-11 72.0 34 85.3
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.0e-10 71.6 38 76.3
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 1.0e-10 71.6 38 76.3
FvH4_5g35251 Fragaria vesca HOM05D007421 ORTHO05D009203 5.2e-10 69.3 110 41.8
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 5.2e-10 69.3 34 76.5
Prupe.4G263300 Prunus persica HOM05D007421 ORTHO05D009203 1.1e-09 68.2 87 47.1
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 1.3e-08 64.7 61 50.8
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.3e-08 64.7 35 68.6
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.7e-08 64.3 135 36.3
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 1.4e-07 61.2 56 55.4
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 2.4e-07 60.5 90 37.8
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 4.1e-07 59.7 104 41.3
EL10Ac2g04521 Beta vulgaris HOM05D002710 ORTHO05D002905 7.0e-07 58.9 42 52.4
CiPaw.05G243800 Carya illinoinensis HOM05D002710 ORTHO05D002905 7.0e-07 58.9 35 60.0
Sed0001518 Sechium edule HOM05D002710 ORTHO05D002905 7.0e-07 58.9 35 60.0
QL01p003296 Quercus lobata HOM05D002710 ORTHO05D002905 9.1e-07 58.5 35 60.0
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 9.1e-07 58.5 35 60.0
QL01p003332 Quercus lobata HOM05D002710 ORTHO05D002905 9.1e-07 58.5 35 60.0
Duzib268G0186 Durio zibethinus HOM05D002710 ORTHO05D002905 1.2e-06 58.2 35 60.0
Eucgr.F02796 Eucalyptus grandis HOM05D002710 ORTHO05D002905 1.2e-06 58.2 108 33.3
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 1.2e-06 58.2 103 41.7
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 1.2e-06 58.2 103 41.7
ATR0053G009 Amborella trichopoda HOM05D002710 ORTHO05D002905 1.6e-06 57.8 35 57.1
ClCG01G005960 Citrullus lanatus HOM05D002710 ORTHO05D002905 1.6e-06 57.8 35 60.0
MELO3C005335.2 Cucumis melo HOM05D002710 ORTHO05D002905 1.6e-06 57.8 35 60.0
CsaV3_5G028730 Cucumis sativus L. HOM05D002710 ORTHO05D002905 1.6e-06 57.8 35 60.0
Sabra10G0089300 Salix brachista HOM05D002710 ORTHO05D002905 1.6e-06 57.8 35 57.1
Sed0018266 Sechium edule HOM05D002710 ORTHO05D002905 1.6e-06 57.8 35 60.0
CDE05G0816 Ceratophyllum demersum HOM05D002710 ORTHO05D002905 2.0e-06 57.4 35 60.0
RcHm_v2.0_Chr7g0231151 Rosa chinensis HOM05D007421 ORTHO05D009203 2.0e-06 57.4 85 47.1
RcHm_v2.0_Chr7g0236421 Rosa chinensis HOM05D007421 ORTHO05D009203 2.0e-06 57.4 75 49.3
EL10Ac6g14280 Beta vulgaris HOM05D002710 ORTHO05D002905 2.7e-06 57.0 35 57.1
AUR62023217 Chenopodium quinoa HOM05D002710 ORTHO05D002905 2.7e-06 57.0 35 57.1
AUR62044613 Chenopodium quinoa HOM05D002710 ORTHO05D002905 2.7e-06 57.0 35 57.1
Potri.010G118700 Populus trichocarpa HOM05D002710 ORTHO05D002905 2.7e-06 57.0 35 57.1
Cfa015825 Carpinus fangiana HOM05D002710 ORTHO05D002905 3.5e-06 56.6 35 57.1
Ciclev10015908m.g Citrus clementina HOM05D002710 ORTHO05D002905 3.5e-06 56.6 35 57.1
Haze_00668 Corylus avellana HOM05D002710 ORTHO05D002905 3.5e-06 56.6 35 57.1
Gohir.A12G141300 Gossypium hirsutum HOM05D002710 ORTHO05D002905 3.5e-06 56.6 35 57.1
Gohir.D12G146200 Gossypium hirsutum HOM05D002710 ORTHO05D002905 3.5e-06 56.6 35 57.1
Gorai.008G157500 Gossypium raimondii HOM05D002710 ORTHO05D002905 3.5e-06 56.6 35 57.1
Thecc.02G219500 Theobroma cacao HOM05D002710 ORTHO05D002905 3.5e-06 56.6 35 57.1
Os01g0645000 Oryza sativa ssp. japonica HOM05D002710 ORTHO05D002905 4.5e-06 56.2 35 57.1
Sc11g0008490 Simmondsia chinensis HOM05D002710 ORTHO05D002905 4.5e-06 56.2 32 65.6
Ah.16g101480 Amaranthus hybridus HOM05D002710 ORTHO05D002905 5.9e-06 55.8 35 57.1
MSTRG.867 Avicennia marina HOM05D002710 ORTHO05D002905 5.9e-06 55.8 35 57.1
Lalb_Chr12g0208501 Lupinus albus HOM05D007421 ORTHO05D009203 5.9e-06 55.8 168 29.8
MD16G1035800 Malus domestica HOM05D002710 ORTHO05D002905 5.9e-06 55.8 35 57.1
Peaxi162Scf00205g01217 Petunia axillaris HOM05D002710 ORTHO05D002905 5.9e-06 55.8 35 54.3
Solyc05g008670.3 Solanum lycopersicum HOM05D002710 ORTHO05D002905 5.9e-06 55.8 58 44.8
PGSC0003DMG400030567 Solanum tuberosum HOM05D002710 ORTHO05D002905 5.9e-06 55.8 58 44.8
vmacro18065 Vaccinium macrocarpon HOM05D002710 ORTHO05D002905 5.9e-06 55.8 35 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2304 Anthoceros agrestis HOM05D002710 ORTHO05D002905 7.7e-06 55.5 35 54.3
Cc11_g09530 Coffea canephora HOM05D002710 ORTHO05D002905 7.7e-06 55.5 35 54.3
SalBow3G4526 Salvia bowleyana HOM05D002710 ORTHO05D002905 7.7e-06 55.5 83 36.1


User provided reference genes

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