Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 5.4e-37 157.1 79 100.0
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 2.1e-20 102.1 52 96.2
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 6.7e-11 70.5 37 83.8
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.5e-10 69.3 37 83.8
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 4.3e-10 67.8 37 83.8
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 2.1e-09 65.5 37 83.8
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 2.1e-09 65.5 37 83.8
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.8e-09 65.1 50 68.0
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 4.8e-09 64.3 43 72.1
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 6.2e-09 63.9 30 93.3
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 6.2e-09 63.9 45 68.9
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.1e-08 63.2 29 96.6
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.1e-08 63.2 29 96.6
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-08 63.2 29 96.6
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 1.1e-08 63.2 29 96.6
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 1.4e-08 62.8 29 96.6
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 1.8e-08 62.4 37 81.1
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 1.8e-08 62.4 30 90.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.8e-08 62.4 29 93.1
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.4e-08 62.0 29 93.1
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 2.4e-08 62.0 29 93.1
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.4e-08 62.0 29 93.1
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.1e-08 61.6 29 96.6
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.1e-08 61.6 29 96.6
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.1e-08 61.6 29 96.6
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 4.0e-08 61.2 30 86.7
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 4.0e-08 61.2 32 84.4
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 5.3e-08 60.8 51 56.9
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 5.3e-08 60.8 30 90.0
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 5.3e-08 60.8 34 82.4
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 6.9e-08 60.5 29 89.7
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 6.9e-08 60.5 49 63.3
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 6.9e-08 60.5 29 89.7
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 6.9e-08 60.5 29 93.1
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 6.9e-08 60.5 29 93.1
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 6.9e-08 60.5 29 93.1
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 6.9e-08 60.5 29 93.1
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 9.0e-08 60.1 29 89.7
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 9.0e-08 60.1 29 89.7
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 9.0e-08 60.1 40 75.0
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 9.0e-08 60.1 29 93.1
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.2e-07 59.7 33 84.8
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.2e-07 59.7 33 84.8
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.2e-07 59.7 46 67.4
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 1.2e-07 59.7 30 86.7
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 1.2e-07 59.7 32 87.5
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 1.5e-07 59.3 31 87.1
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.5e-07 59.3 29 89.7
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 2.0e-07 58.9 29 93.1
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.0e-07 58.9 29 89.7
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 2.0e-07 58.9 29 89.7
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 2.6e-07 58.5 29 82.8
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 2.6e-07 58.5 39 69.2
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 2.6e-07 58.5 34 79.4
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.6e-07 58.5 29 93.1
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 3.4e-07 58.2 42 66.7
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 3.4e-07 58.2 36 75.0
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.4e-07 58.2 50 58.0
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 4.5e-07 57.8 29 89.7
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.5e-07 57.8 29 89.7
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 5.8e-07 57.4 41 65.9
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 5.8e-07 57.4 29 89.7
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 5.8e-07 57.4 29 89.7
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 5.8e-07 57.4 29 89.7
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 5.8e-07 57.4 29 89.7
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 7.6e-07 57.0 29 89.7
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 7.6e-07 57.0 29 89.7
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 7.6e-07 57.0 31 80.6
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 7.6e-07 57.0 29 89.7
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 7.6e-07 57.0 29 89.7
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 7.6e-07 57.0 29 89.7
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 7.6e-07 57.0 29 89.7
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 7.6e-07 57.0 29 89.7
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 7.6e-07 57.0 29 86.2
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 9.9e-07 56.6 30 83.3
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 9.9e-07 56.6 41 65.9
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.9e-07 56.6 48 60.4
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 9.9e-07 56.6 30 83.3
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.3e-06 56.2 30 86.7
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.3e-06 56.2 29 89.7
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.3e-06 56.2 29 89.7
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 1.3e-06 56.2 32 75.0
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 1.3e-06 56.2 28 89.3
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-06 56.2 38 71.1
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.3e-06 56.2 29 82.8
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.3e-06 56.2 29 82.8
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 1.3e-06 56.2 29 86.2
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 1.3e-06 56.2 33 72.7
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 1.7e-06 55.8 29 79.3
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.7e-06 55.8 29 86.2
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.7e-06 55.8 29 86.2
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 1.7e-06 55.8 29 86.2
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.7e-06 55.8 29 86.2
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 2.2e-06 55.5 29 89.7
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.2e-06 55.5 29 79.3
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 2.9e-06 55.1 29 82.8
C02p49050 Brassica napus HOM05D003896 ORTHO05D004517 2.9e-06 55.1 44 61.4
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.9e-06 55.1 29 79.3
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 3.8e-06 54.7 30 76.7
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 3.8e-06 54.7 29 86.2
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.9e-06 54.3 28 85.7
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 6.4e-06 53.9 29 79.3
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 8.4e-06 53.5 29 86.2
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 8.4e-06 53.5 28 82.1
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 8.4e-06 53.5 30 80.0
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 8.4e-06 53.5 29 86.2


User provided reference genes

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