Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.4e-227 792.7 429 100.0
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 3.0e-182 642.1 426 82.6
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 5.0e-177 624.8 418 82.1
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 3.0e-166 589.0 428 77.3
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 6.3e-164 581.3 433 76.7
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.8e-163 579.7 425 76.9
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 2.0e-162 576.2 431 76.3
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 3.8e-161 572.0 426 75.8
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 8.5e-161 570.9 439 72.4
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 9.4e-160 567.4 424 75.2
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.6e-159 566.6 428 75.0
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.6e-159 566.6 424 75.7
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.7e-159 565.1 426 74.9
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 5.2e-158 561.6 430 74.4
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.7e-158 561.2 416 76.0
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 3.7e-156 555.4 446 71.5
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.3e-156 554.7 427 73.3
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.1e-155 553.9 425 74.6
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 1.1e-155 553.9 430 74.0
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.1e-155 553.9 430 74.0
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.4e-155 553.5 427 73.5
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 9.1e-155 550.8 427 73.3
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.2e-154 550.4 421 74.6
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.6e-154 550.1 427 73.3
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.5e-154 548.9 425 73.6
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.3e-153 547.0 426 72.8
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.7e-153 546.6 425 72.0
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 1.2e-151 540.4 474 67.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.1e-151 539.7 425 71.8
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 3.4e-149 532.3 430 70.7
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.5e-149 531.2 425 71.3
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.2e-148 529.6 416 73.1
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 8.3e-148 527.7 427 72.4
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 2.4e-147 526.2 409 72.9
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 7.0e-147 524.6 425 70.8
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.5e-146 522.3 422 70.1
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 7.7e-146 521.2 432 70.6
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.3e-145 520.4 432 71.8
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.3e-145 520.4 417 74.1
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.3e-145 520.4 426 71.6
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.7e-145 520.0 426 72.3
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-144 517.3 418 71.1
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 5.5e-144 515.0 419 69.7
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.3e-142 509.6 435 70.1
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.4e-141 505.4 427 68.6
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 7.5e-141 504.6 419 70.9
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 8.3e-140 501.1 421 69.4
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.1e-139 500.7 416 69.5
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.1e-139 500.7 452 67.9
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 9.2e-139 497.7 418 69.1
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.3e-137 493.0 373 75.1
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.5e-136 490.3 421 70.1
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.9e-136 490.0 438 67.6
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 5.6e-136 488.4 504 60.5
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 9.5e-136 487.6 429 69.0
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 4.0e-134 482.3 445 63.4
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 8.9e-134 481.1 426 66.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 3.4e-133 479.2 427 67.2
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.3e-132 477.2 430 66.7
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 4.9e-132 475.3 374 72.7
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 4.9e-132 475.3 418 68.7
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.1e-131 474.2 435 67.8
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-129 467.2 435 66.0
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 5.0e-129 465.3 443 62.1
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 8.6e-129 464.5 373 71.8
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.1e-128 464.2 428 64.3
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 3.7e-124 449.1 430 63.3
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.9e-124 448.7 415 63.1
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 6.4e-124 448.4 427 64.6
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.4e-123 447.2 425 62.4
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.6e-122 443.7 430 63.7
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.1e-122 443.4 402 64.9
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 2.7e-122 443.0 404 64.9
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 3.5e-122 442.6 417 64.3
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 4.6e-122 442.2 427 61.6
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 7.8e-122 441.4 427 62.5
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.9e-121 439.1 431 62.2
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 8.6e-121 438.0 403 64.8
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 8.6e-121 438.0 431 61.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.5e-117 427.2 431 60.1
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.0e-117 426.8 402 63.4
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 2.6e-117 426.4 412 63.1
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 4.4e-117 425.6 421 61.3
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 7.5e-117 424.9 414 62.6
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 2.4e-115 419.9 406 62.1
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 4.1e-115 419.1 406 60.8
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 7.1e-115 418.3 421 60.8
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 4.6e-114 415.6 434 59.2
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 3.0e-113 412.9 426 59.6
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 8.6e-113 411.4 417 60.9
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.1e-112 411.0 369 64.0
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 7.3e-112 408.3 401 61.1
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.6e-111 407.1 393 62.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.6e-111 407.1 393 62.6
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.1e-111 406.8 417 59.7
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.8e-111 406.4 417 59.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 3.1e-110 402.9 395 61.0
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.2e-110 402.1 283 77.7
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 9.9e-109 397.9 299 75.6
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.1e-107 394.4 414 60.6
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.9e-107 393.7 435 59.5
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.3e-105 387.5 415 57.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.1e-104 384.4 355 63.1
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 8.4e-100 368.2 467 52.5
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 5.1e-97 359.0 426 53.5
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 2.1e-95 353.6 311 66.9
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 2.4e-91 340.1 399 55.9
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.5e-90 336.3 422 54.7
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.3e-89 334.3 323 62.5
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.1e-88 331.3 432 53.2
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 4.3e-88 329.3 403 52.6
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 3.7e-87 326.2 307 64.8
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.1e-86 324.7 196 90.3
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.9e-86 322.0 274 69.0
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-83 314.3 258 69.8
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.4e-83 314.3 264 68.6
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 5.7e-80 302.4 271 69.4
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 4.6e-74 282.7 337 54.6
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 3.3e-72 276.6 291 60.1
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 4.8e-71 272.7 273 64.5
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 3.2e-67 260.0 274 60.6
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 4.2e-67 259.6 192 75.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.6e-66 257.7 274 60.9
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.0e-65 255.0 274 59.5
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 9.7e-64 248.4 427 43.3
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.7e-63 247.7 272 60.3
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.4e-62 243.8 337 50.4
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 3.4e-61 240.0 141 90.8
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 5.9e-61 239.2 414 44.0
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 7.2e-59 232.3 274 52.2
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 2.2e-55 220.7 185 70.3
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 2.4e-54 217.2 268 54.9
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 2.2e-52 210.7 136 80.1
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.5e-51 208.0 444 39.2
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.9e-51 207.6 135 80.0
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.8e-49 201.1 267 51.7
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 7.4e-48 195.7 441 39.7
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 2.2e-47 194.1 187 63.6
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-40 171.8 166 57.2
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 3.7e-39 166.8 403 38.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.5e-37 159.8 152 60.5
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.2e-32 145.2 443 33.0
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 7.7e-29 132.5 114 64.0
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 4.9e-23 113.2 131 57.3
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 3.3e-19 100.5 232 40.1
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.4e-09 68.6 147 36.1
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 1.4e-06 58.5 108 38.9
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 4.1e-06 57.0 37 67.6


User provided reference genes

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