Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 0.0e+00 1564.3 838 100.0
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 0.0e+00 1244.6 840 81.8
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1221.1 835 79.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1219.5 835 79.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1133.6 837 73.6
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1109.4 839 72.7
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 0.0e+00 1102.4 843 71.4
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1102.0 834 71.6
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1085.9 835 69.9
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 0.0e+00 1085.1 845 69.6
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 0.0e+00 1075.5 834 71.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 5.7e-312 1073.9 837 71.0
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 5.7e-312 1073.5 842 68.6
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 8.2e-309 1063.5 834 69.5
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.8e-308 1062.4 849 68.4
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.0e-307 1058.9 839 68.5
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 5.9e-307 1057.4 839 67.2
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 7.7e-307 1057.0 837 68.1
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 7.7e-307 1057.0 838 68.3
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.0e-306 1056.6 834 70.3
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 5.0e-306 1054.3 840 70.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.4e-305 1052.7 832 67.9
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.9e-305 1052.4 832 68.1
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 9.4e-305 1050.0 836 67.5
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.4e-303 1046.2 833 67.5
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.0e-303 1045.0 830 70.0
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 8.8e-303 1043.5 836 67.0
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.0e-302 1042.3 837 68.5
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.5e-302 1042.0 832 67.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 7.4e-302 1040.4 840 68.0
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.7e-301 1039.3 843 68.1
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.9e-300 1033.9 828 67.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.0e-299 1032.3 848 68.8
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.6e-299 1031.9 838 67.3
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.5e-299 1031.2 834 66.4
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 8.5e-298 1026.9 832 66.2
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 5.5e-297 1024.2 835 66.3
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.6e-296 1022.7 839 66.6
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.7e-296 1021.9 833 66.0
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 7.9e-296 1020.4 835 68.0
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 5.1e-295 1017.7 841 67.4
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.7e-295 1017.3 837 66.5
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.2e-293 1012.3 836 67.3
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 4.8e-293 1011.1 825 66.7
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.4e-292 1009.6 847 66.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.6e-291 1005.4 835 66.3
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.7e-291 1003.8 840 67.1
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.6e-288 996.1 836 66.0
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 4.7e-288 994.6 847 67.1
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.7e-287 990.7 840 65.8
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.6e-283 978.8 839 65.7
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 2.9e-282 975.3 836 65.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.8e-282 974.9 834 64.9
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 3.8e-282 974.9 846 63.6
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.2e-278 963.4 836 65.3
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 7.5e-278 960.7 838 62.8
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.4e-276 955.7 836 62.8
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 9.1e-276 953.7 835 64.8
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.2e-274 949.1 841 63.0
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.9e-274 948.7 827 64.7
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.5e-274 947.6 846 62.2
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.6e-272 943.0 839 62.7
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.8e-271 939.5 832 63.2
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.4e-270 935.3 852 63.5
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.7e-270 934.5 840 62.7
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 8.3e-269 930.6 864 61.2
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.7e-266 922.9 829 64.4
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.0e-263 911.8 843 59.7
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.0e-262 909.4 835 58.8
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.7e-261 905.2 925 57.1
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.3e-258 896.0 783 64.4
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 7.3e-257 891.0 812 59.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.6e-256 889.8 840 57.9
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.2e-253 879.4 842 59.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 3.7e-253 878.6 836 59.0
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 3.7e-253 878.6 836 59.0
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 8.3e-253 877.5 843 57.2
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.4e-252 876.7 836 60.2
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 9.2e-252 874.0 814 59.8
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 6.0e-251 871.3 837 59.7
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 6.0e-251 871.3 837 59.7
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.0e-250 870.5 871 57.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.1e-248 862.8 838 57.4
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 8.9e-247 857.4 831 57.2
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 6.4e-245 851.3 833 60.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 8.3e-245 850.9 838 61.3
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 6.0e-243 844.7 843 56.3
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 9.5e-241 837.4 835 57.5
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-240 836.6 847 57.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.6e-238 829.3 855 55.3
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 2.7e-235 819.3 840 57.5
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.7e-235 819.3 853 54.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 4.6e-235 818.5 846 55.3
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.2e-232 808.1 831 54.6
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 4.0e-223 778.9 823 54.8
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.7e-219 766.1 683 61.9
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 5.6e-217 758.4 685 60.1
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 7.9e-211 738.0 854 51.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 5.3e-207 725.3 843 50.4
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.1e-199 701.0 621 60.7
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-194 684.5 558 64.9
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.4e-190 669.5 604 65.2
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 8.5e-181 638.3 606 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.0e-158 563.9 884 42.5
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 6.1e-147 525.8 452 63.3
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.2e-145 521.5 847 42.9
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 5.9e-142 509.2 883 40.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.0e-141 506.1 481 62.2
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 4.0e-138 496.5 825 41.1
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 7.5e-137 492.3 380 68.2
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.1e-135 486.5 384 68.8
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 8.3e-128 462.2 281 93.2
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.3e-124 450.3 450 61.8
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 3.4e-121 440.3 243 95.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 3.3e-116 423.7 227 93.4
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 4.7e-115 419.9 236 93.2
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.8e-114 417.9 429 55.9
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.6e-113 412.5 313 69.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 1.3e-107 395.2 635 37.6
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.4e-97 360.5 327 63.9
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 3.2e-95 354.0 446 48.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-94 352.1 294 63.9
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.8e-82 311.6 337 52.5
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 2.2e-75 288.1 200 72.5
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 5.5e-71 273.5 267 62.2
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 6.9e-66 256.5 936 28.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 3.3e-60 237.7 195 65.6
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 4.5e-57 227.3 215 56.3
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 4.7e-54 217.2 157 66.9
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.7e-51 207.6 181 61.9
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.6e-44 184.9 176 70.5
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.7e-43 182.2 158 57.6
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.8e-42 178.7 208 53.4
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 5.7e-36 157.1 170 54.1
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 6.3e-35 153.7 158 57.0
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 9.2e-34 149.8 274 40.1
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.9e-33 147.1 183 45.4
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.3e-32 146.0 111 71.2
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.5e-31 142.5 276 38.4
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.2e-30 139.4 609 25.9
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-30 139.0 283 37.5
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.6e-30 137.9 604 24.7
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 6.8e-29 133.7 519 26.2
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.4e-26 125.9 104 60.6
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.4e-26 125.2 73 72.6
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-25 122.9 96 65.6
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 2.3e-21 108.6 118 53.4
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 4.0e-21 107.8 173 48.0
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 6.4e-19 100.5 196 44.4
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.9e-18 99.0 199 43.7
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-17 96.3 76 64.5
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.0e-16 91.7 123 51.2
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.1e-15 89.7 55 76.4
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 3.6e-14 84.7 105 46.7
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.6e-12 78.6 73 52.1
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.3e-11 76.3 67 58.2
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 1.2e-09 69.7 90 52.2
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 3.9e-08 64.7 44 68.2
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.9e-08 64.7 44 68.2
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 5.1e-08 64.3 53 60.4
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.5e-07 62.8 44 65.9
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.5e-07 62.0 50 60.0
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.3e-07 61.2 44 65.9
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 9.5e-07 60.1 65 49.2
arahy.Tifrunner.gnm1.ann1.3YA0AF Arachis hypogaea HOM05D004092 ORTHO05D005448 1.6e-06 59.3 55 61.8
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 6.2e-06 57.4 148 28.4


User provided reference genes

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