Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.3e-188 662.9 335 100.0
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.5e-173 612.8 402 81.8
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.6e-173 612.1 336 90.2
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.9e-163 579.3 319 89.0
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.1e-162 575.9 335 86.6
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 9.6e-160 567.0 334 85.0
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 5.3e-158 561.2 336 84.8
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 6.9e-158 560.8 336 84.8
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 6.9e-158 560.8 337 84.0
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.0e-157 559.3 334 82.9
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 4.5e-157 558.1 335 82.7
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 4.5e-157 558.1 334 82.0
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 5.8e-157 557.8 337 84.9
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 5.8e-157 557.8 337 83.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 5.8e-157 557.8 334 82.9
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 7.6e-157 557.4 335 83.3
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.7e-156 556.2 329 83.6
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.7e-156 556.2 333 81.7
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 2.2e-156 555.8 338 82.5
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 6.4e-156 554.3 329 84.5
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.4e-155 553.1 332 81.9
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 2.4e-155 552.4 333 81.7
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 7.1e-155 550.8 331 81.6
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.7e-154 548.9 335 81.8
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 2.7e-154 548.9 336 81.8
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.6e-154 548.1 330 81.5
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.9e-154 547.4 332 81.3
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 7.9e-154 547.4 334 82.6
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 7.9e-154 547.4 325 83.1
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.8e-153 546.2 328 82.3
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 3.9e-153 545.0 319 85.0
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 6.7e-153 544.3 328 80.8
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.1e-152 543.5 320 84.1
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.9e-152 542.7 326 81.6
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.3e-152 541.6 345 78.3
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 7.4e-152 540.8 335 80.3
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 9.6e-152 540.4 337 80.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.6e-151 539.7 332 80.7
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.6e-151 539.7 331 81.3
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.6e-151 539.7 327 82.3
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 6.2e-151 537.7 335 79.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 8.1e-151 537.3 325 81.5
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 2.4e-150 535.8 331 80.1
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 3.1e-150 535.4 331 80.1
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.1e-150 535.4 333 79.9
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 6.9e-150 534.3 371 74.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 9.0e-150 533.9 325 81.2
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.5e-149 533.1 324 78.4
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.4e-149 531.9 340 78.8
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 3.4e-149 531.9 333 78.7
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 7.6e-149 530.8 340 78.5
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-148 530.0 345 77.4
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.7e-148 529.6 326 81.6
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 2.9e-148 528.9 326 80.7
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.9e-148 528.9 331 79.5
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 3.8e-148 528.5 340 78.2
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 3.2e-147 525.4 331 79.2
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 5.5e-147 524.6 342 77.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 7.1e-147 524.2 323 80.8
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.2e-146 523.5 341 77.4
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.2e-146 523.5 375 70.7
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.2e-146 523.5 340 77.6
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.7e-146 522.3 334 77.5
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 3.5e-146 521.9 327 81.3
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 3.5e-146 521.9 327 81.3
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 7.9e-146 520.8 372 71.8
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 7.9e-146 520.8 378 70.9
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.0e-145 520.4 330 78.2
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 1.0e-145 520.4 320 82.5
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-145 520.0 341 76.8
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.3e-145 520.0 341 76.8
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 2.3e-145 519.2 320 80.0
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 5.1e-145 518.1 336 77.7
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 8.7e-145 517.3 338 77.8
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.5e-144 515.8 334 77.8
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.5e-144 515.8 331 77.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 4.3e-144 515.0 331 77.3
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 5.7e-144 514.6 331 77.3
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 7.4e-144 514.2 335 76.7
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.3e-143 513.5 331 77.6
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.6e-143 513.1 320 76.6
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 4.8e-143 511.5 332 78.0
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 6.3e-143 511.1 321 81.6
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 8.2e-143 510.8 336 76.5
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.1e-142 510.4 335 77.3
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 5.3e-142 508.1 328 76.8
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.2e-141 506.9 337 76.3
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.2e-140 502.7 337 76.3
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.7e-138 495.7 308 79.5
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 7.9e-138 494.2 332 74.7
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.0e-132 474.9 334 71.6
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 3.2e-131 472.2 342 71.9
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 4.2e-131 471.9 321 74.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 5.5e-131 471.5 333 70.9
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.0e-129 467.2 334 68.0
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 2.2e-127 459.5 334 67.1
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.4e-123 446.8 250 87.6
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 6.7e-121 438.0 341 63.9
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 4.4e-120 435.3 331 66.8
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 5.7e-120 434.9 247 85.4
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 9.7e-120 434.1 250 84.4
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.2e-117 427.2 252 81.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.3e-116 423.7 251 82.1
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.2e-111 406.4 373 62.2
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.8e-110 403.3 333 63.7
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.6e-109 400.2 335 64.5
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.1e-107 394.0 318 67.3
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.6e-106 390.2 335 64.5
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 3.7e-103 379.0 244 73.4
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.5e-91 340.5 316 57.6
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 2.0e-88 330.1 198 80.3
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 6.8e-81 305.1 234 65.8
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 2.1e-74 283.5 317 47.6
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.1e-70 271.2 222 67.6
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.7e-68 263.8 263 52.1
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 3.0e-68 263.1 199 64.3
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 3.2e-62 243.0 134 83.6
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 7.1e-62 241.9 136 84.6
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.6e-61 240.7 311 46.6
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 6.2e-58 228.8 130 83.1
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.5e-56 224.2 176 63.6
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-41 174.9 132 67.4
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 3.1e-41 173.3 132 66.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.4e-38 164.5 124 66.9
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.2e-38 162.9 100 79.0
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.2e-38 162.9 125 66.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.2e-38 162.9 125 66.4
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.5e-38 162.5 134 64.2
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 4.6e-37 159.5 125 64.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-35 152.5 163 51.5
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 3.7e-34 149.8 107 71.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.2e-32 144.8 201 45.3
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.5e-27 127.9 93 67.7
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 4.5e-24 116.3 67 91.0
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 2.9e-23 113.6 81 66.7
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.9e-22 110.9 75 70.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-20 104.8 203 38.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.9e-19 100.9 61 78.7
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.2e-18 97.4 54 88.9
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 4.8e-18 96.3 70 71.4
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.7e-15 87.8 70 65.7
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 6.5e-15 85.9 67 70.1
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 6.5e-15 85.9 66 69.7
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.6e-13 81.3 180 32.2
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 7.7e-08 62.4 76 47.4
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 1.3e-07 61.6 172 29.1
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 1.3e-07 61.6 173 27.7
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 2.9e-07 60.5 80 47.5
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 8.5e-07 58.9 60 58.3
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 9.4e-06 55.5 164 28.0


User provided reference genes

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