Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005484 Carpinus fangiana HOM05D003571 ORTHO05D004193 2.7e-64 248.4 119 100.0
Haze_20580 Corylus avellana HOM05D003571 ORTHO05D004193 5.6e-38 161.0 85 94.1
Cfa017571 Carpinus fangiana HOM05D003571 ORTHO05D004193 1.3e-37 159.8 85 92.9
COL.COLO4_26995 Corchorus olitorius HOM05D003571 ORTHO05D004193 1.2e-35 153.3 85 88.2
QL07p044235 Quercus lobata HOM05D003571 ORTHO05D004193 2.9e-34 148.7 85 85.9
Thecc.05G061900 Theobroma cacao HOM05D003571 ORTHO05D004193 1.1e-33 146.7 85 84.7
Atru.chr8.1854 Acer truncatum HOM05D003571 ORTHO05D004193 2.5e-33 145.6 85 84.7
CiPaw.09G174600 Carya illinoinensis HOM05D003571 ORTHO05D004193 2.5e-33 145.6 85 84.7
Duzib106G0011 Durio zibethinus HOM05D003571 ORTHO05D004193 5.5e-33 144.4 85 83.5
arahy.Tifrunner.gnm1.ann1.QCG7AI Arachis hypogaea HOM05D003571 ORTHO05D004193 9.3e-33 143.7 85 82.4
arahy.Tifrunner.gnm1.ann1.W3VJBC Arachis hypogaea HOM05D003571 ORTHO05D004193 9.3e-33 143.7 85 82.4
Duzib093G0844 Durio zibethinus HOM05D003571 ORTHO05D004193 1.2e-32 143.3 85 84.7
Cfa012856 Carpinus fangiana HOM05D003571 ORTHO05D004193 2.1e-32 142.5 79 87.3
Cpa.g.sc390.5 Carica papaya HOM05D003571 ORTHO05D004193 3.5e-32 141.7 90 80.0
arahy.Tifrunner.gnm1.ann1.4G0IWV Arachis hypogaea HOM05D003571 ORTHO05D004193 7.9e-32 140.6 85 81.2
arahy.Tifrunner.gnm1.ann1.SVA4CI Arachis hypogaea HOM05D003571 ORTHO05D004193 7.9e-32 140.6 85 81.2
Phvul.007G150600 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 5.1e-31 137.9 85 80.0
VMungo0720G3123 Vigna mungo HOM05D003571 ORTHO05D004193 5.1e-31 137.9 85 80.0
Prupe.6G235600 Prunus persica HOM05D003571 ORTHO05D004193 8.7e-31 137.1 84 79.8
Lj5g0026041 Lotus japonicus HOM05D003571 ORTHO05D004193 1.1e-30 136.7 85 78.8
ClCG04G009140 Citrullus lanatus HOM05D003571 ORTHO05D004193 1.5e-30 136.3 87 79.3
Gohir.A11G324380 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.9e-30 136.0 85 81.2
CiPaw.10G133100 Carya illinoinensis HOM05D003571 ORTHO05D004193 3.3e-30 135.2 80 82.5
TWI74G0293 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 3.3e-30 135.2 89 75.3
FAN09G2327 Fragaria x ananassa HOM05D003571 ORTHO05D004193 5.7e-30 134.4 88 80.7
CsaV3_6G039650 Cucumis sativus L. HOM05D003571 ORTHO05D004193 7.4e-30 134.0 87 78.2
FvH4_6g16040 Fragaria vesca HOM05D003571 ORTHO05D004193 7.4e-30 134.0 87 81.6
Gohir.D11G343600 Gossypium hirsutum HOM05D003571 ORTHO05D004193 7.4e-30 134.0 85 80.0
Gorai.007G373800 Gossypium raimondii HOM05D003571 ORTHO05D004193 7.4e-30 134.0 85 80.0
MELO3C014230.2 Cucumis melo HOM05D003571 ORTHO05D004193 1.3e-29 133.3 87 78.2
Gorai.006G166200 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.3e-29 133.3 82 80.5
PGR142G1072 Punica granatum HOM05D003571 ORTHO05D004193 1.3e-29 133.3 83 75.9
FAN14G4150 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.6e-29 132.9 87 80.5
MD04G1096400 Malus domestica HOM05D003571 ORTHO05D004193 1.6e-29 132.9 84 79.8
Sed0010243 Sechium edule HOM05D003571 ORTHO05D004193 1.6e-29 132.9 88 75.0
GSVIVG01025701001 Vitis vinifera HOM05D003571 ORTHO05D004193 2.1e-29 132.5 86 77.9
FAN05G4723 Fragaria x ananassa HOM05D003571 ORTHO05D004193 3.7e-29 131.7 87 80.5
RcHm_v2.0_Chr3g0469791 Rosa chinensis HOM05D003571 ORTHO05D004193 8.2e-29 130.6 87 80.5
Gohir.D09G144900 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.4e-28 129.8 82 79.3
vmacro08767 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 1.4e-28 129.8 84 76.2
Gohir.A09G149000 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.8e-28 129.4 82 78.0
Sed0017601 Sechium edule HOM05D003571 ORTHO05D004193 2.4e-28 129.0 87 77.0
TWI53G0828 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 5.3e-28 127.9 87 69.0
MD12G1117400 Malus domestica HOM05D003571 ORTHO05D004193 9.0e-28 127.1 84 76.2
TAR623G0708 Trochodendron aralioides HOM05D003571 ORTHO05D004193 9.0e-28 127.1 82 78.0
Thhalv10012456m.g Eutrema salsugineum HOM05D003571 ORTHO05D004193 1.2e-27 126.7 88 71.6
FAN02G1851 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.5e-27 126.3 87 77.0
Phvul.001G177500 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 1.5e-27 126.3 81 74.1
AL6G12590 Arabidopsis lyrata HOM05D003571 ORTHO05D004193 2.0e-27 125.9 84 75.0
AT5G03280 Arabidopsis thaliana HOM05D003571 ORTHO05D004193 2.0e-27 125.9 84 75.0
Glyma.03G181400 Glycine max HOM05D003571 ORTHO05D004193 2.0e-27 125.9 83 72.3
Nn2g13718 Nelumbo nucifera HOM05D003571 ORTHO05D004193 2.0e-27 125.9 81 77.8
TAR636G0639 Trochodendron aralioides HOM05D003571 ORTHO05D004193 2.0e-27 125.9 76 80.3
TAR636G1534 Trochodendron aralioides HOM05D003571 ORTHO05D004193 2.0e-27 125.9 76 80.3
Dinv37294 Davidia involucrata HOM05D003571 ORTHO05D004193 5.8e-27 124.4 86 76.7
Potri.016G090800 Populus trichocarpa HOM05D003571 ORTHO05D004193 5.8e-27 124.4 70 87.1
Carub.0006s0208 Capsella rubella HOM05D003571 ORTHO05D004193 1.0e-26 123.6 80 75.0
CANSAT80G1173 Cannabis sativa HOM05D003571 ORTHO05D004193 1.3e-26 123.2 87 71.3
Glyma.10G058300 Glycine max HOM05D003571 ORTHO05D004193 1.3e-26 123.2 80 76.2
Peaxi162Scf00123g00089 Petunia axillaris HOM05D003571 ORTHO05D004193 1.7e-26 122.9 91 72.5
Sp6g39460 Schrenkiella parvula HOM05D003571 ORTHO05D004193 1.7e-26 122.9 88 70.5
THA.LOC104816665 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 1.7e-26 122.9 85 71.8
VMungo1383G0779 Vigna mungo HOM05D003571 ORTHO05D004193 1.7e-26 122.9 81 74.1
Aqoxy1G01208 Aquilegia oxysepala HOM05D003571 ORTHO05D004193 2.2e-26 122.5 73 79.5
CSS0031681 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 2.2e-26 122.5 85 76.5
CSS0040711 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 2.2e-26 122.5 85 76.5
Nn2g11512 Nelumbo nucifera HOM05D003571 ORTHO05D004193 2.2e-26 122.5 81 75.3
Nitab4.5_0000101g0260 Nicotiana tabacum HOM05D003571 ORTHO05D004193 2.2e-26 122.5 104 65.4
Rhsim05G0180200 Rhododendron simsii HOM05D003571 ORTHO05D004193 2.2e-26 122.5 83 75.9
CARHR210060 Cardamine hirsuta HOM05D003571 ORTHO05D004193 2.9e-26 122.1 84 72.6
Cc00_g20760 Coffea canephora HOM05D003571 ORTHO05D004193 2.9e-26 122.1 83 75.9
Sabra06G0100000 Salix brachista HOM05D003571 ORTHO05D004193 2.9e-26 122.1 69 87.0
Solyc09g007870.3 Solanum lycopersicum HOM05D003571 ORTHO05D004193 2.9e-26 122.1 86 74.4
THA.LOC104826906 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 2.9e-26 122.1 80 77.5
EL10Ac1g01686 Beta vulgaris HOM05D003571 ORTHO05D004193 3.8e-26 121.7 88 68.2
Lj3C982T5 Lonicera japonica HOM05D003571 ORTHO05D004193 3.8e-26 121.7 84 75.0
Hund17522 Selenicereus undatus HOM05D003571 ORTHO05D004193 3.8e-26 121.7 84 75.0
Sopen09g002710 Solanum pennellii HOM05D003571 ORTHO05D004193 3.8e-26 121.7 86 73.3
PGSC0003DMG400021547 Solanum tuberosum HOM05D003571 ORTHO05D004193 3.8e-26 121.7 86 74.4
BcaC06g32048 Brassica carinata HOM05D003571 ORTHO05D004193 5.0e-26 121.3 80 75.0
BcaNung06157 Brassica carinata HOM05D003571 ORTHO05D004193 5.0e-26 121.3 80 75.0
C09p73500 Brassica napus HOM05D003571 ORTHO05D004193 5.0e-26 121.3 80 75.0
BolC9t60082H Brassica oleracea HOM05D003571 ORTHO05D004193 5.0e-26 121.3 80 75.0
A10p32660 Brassica napus HOM05D003571 ORTHO05D004193 6.5e-26 120.9 80 75.0
BraA10t45303Z Brassica rapa HOM05D003571 ORTHO05D004193 6.5e-26 120.9 80 75.0
Medtr0041s0030 Medicago truncatula HOM05D003571 ORTHO05D004193 6.5e-26 120.9 86 73.3
TAR369G1024 Trochodendron aralioides HOM05D003571 ORTHO05D004193 6.5e-26 120.9 85 74.1
Potri.006G127100 Populus trichocarpa HOM05D003571 ORTHO05D004193 8.4e-26 120.6 69 85.5
SalBow3G2504 Salvia bowleyana HOM05D003571 ORTHO05D004193 8.4e-26 120.6 87 74.7
SalBow3G3339 Salvia bowleyana HOM05D003571 ORTHO05D004193 8.4e-26 120.6 87 74.7
AUR62034361 Chenopodium quinoa HOM05D003571 ORTHO05D004193 1.9e-25 119.4 89 68.5
ECA238G4675 Erigeron canadensis HOM05D003571 ORTHO05D004193 2.5e-25 119.0 86 73.3
CSS0014133 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 3.2e-25 118.6 82 76.8
CSS0046537 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 3.2e-25 118.6 82 76.8
Lj1g0021596 Lotus japonicus HOM05D003571 ORTHO05D004193 3.2e-25 118.6 88 72.7
Aa31LG1G21830 Aethionema arabicum HOM05D003571 ORTHO05D004193 4.2e-25 118.2 68 83.8
Ca_08847_v3 Cicer arietinum L. HOM05D003571 ORTHO05D004193 4.2e-25 118.2 84 73.8
Manes.09G063600 Manihot esculenta HOM05D003571 ORTHO05D004193 4.2e-25 118.2 70 82.9
TPR.G16043 Trifolium pratense HOM05D003571 ORTHO05D004193 5.5e-25 117.9 84 75.0
Eucgr.K01247 Eucalyptus grandis HOM05D003571 ORTHO05D004193 7.2e-25 117.5 83 73.5
PSO063G1543 Papaver somniferum HOM05D003571 ORTHO05D004193 7.2e-25 117.5 85 70.6
Manes.08G008200 Manihot esculenta HOM05D003571 ORTHO05D004193 9.3e-25 117.1 70 81.4
Lalb_Chr25g0289091 Lupinus albus HOM05D003571 ORTHO05D004193 1.2e-24 116.7 72 79.2
Oeu016972.1 Olea europaea HOM05D003571 ORTHO05D004193 1.2e-24 116.7 83 74.7
Gohir.A04G073500 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.6e-24 116.3 71 80.3
Gohir.D04G112300 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.6e-24 116.3 71 80.3
Gorai.009G416700 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.6e-24 116.3 71 80.3
Lsat_1_v5_gn_2_106480 Lactuca sativa HOM05D003571 ORTHO05D004193 2.1e-24 115.9 73 78.1
PSO339G3261 Papaver somniferum HOM05D003571 ORTHO05D004193 2.1e-24 115.9 85 69.4
Sabra16G0096300 Salix brachista HOM05D003571 ORTHO05D004193 3.5e-24 115.2 67 85.1
HanXRQChr07g0195371 Helianthus annuus HOM05D003571 ORTHO05D004193 6.1e-24 114.4 67 83.6
Oeu005332.2 Olea europaea HOM05D003571 ORTHO05D004193 6.1e-24 114.4 83 72.3
vmacro20027 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 6.1e-24 114.4 84 71.4
Migut.J00540 Erythranthe guttata HOM05D003571 ORTHO05D004193 1.0e-23 113.6 76 76.3
Sc02g0001770 Simmondsia chinensis HOM05D003571 ORTHO05D004193 1.0e-23 113.6 73 78.1
MBI07_g30986_MAGBIO Magnolia biondii HOM05D003571 ORTHO05D004193 1.8e-23 112.8 89 65.2
MSTRG.19160 Avicennia marina HOM05D003571 ORTHO05D004193 2.3e-23 112.5 85 68.2
Sc20g0005320 Simmondsia chinensis HOM05D003571 ORTHO05D004193 3.0e-23 112.1 69 81.2
Ah.05g168560 Amaranthus hybridus HOM05D003571 ORTHO05D004193 3.9e-23 111.7 71 80.3
Peaxi162Scf00395g00044 Petunia axillaris HOM05D003571 ORTHO05D004193 1.1e-22 110.2 70 77.1
Rhsim04G0146600 Rhododendron simsii HOM05D003571 ORTHO05D004193 1.5e-22 109.8 70 80.0
CDE04G1686 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 3.3e-22 108.6 74 71.6
DCAR_020834 Daucus carota HOM05D003571 ORTHO05D004193 3.3e-22 108.6 72 73.6
CDE06G0018 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 7.4e-22 107.5 75 69.3
Lj2C113T5 Lonicera japonica HOM05D003571 ORTHO05D004193 7.4e-22 107.5 68 79.4
DCAR_009299 Daucus carota HOM05D003571 ORTHO05D004193 2.2e-21 105.9 72 70.8
PSO801G0607 Papaver somniferum HOM05D003571 ORTHO05D004193 2.2e-21 105.9 80 66.2
Rhsim04G0146300 Rhododendron simsii HOM05D003571 ORTHO05D004193 3.7e-21 105.1 70 78.6
PSO339G5477 Papaver somniferum HOM05D003571 ORTHO05D004193 4.8e-21 104.8 74 70.3
SGA_v2.0_scaffold126G33934 Striga asiatica HOM05D003571 ORTHO05D004193 4.8e-21 104.8 65 80.0
Psat3g041280 Pisum sativum HOM05D003571 ORTHO05D004193 8.2e-21 104.0 83 62.7
ATR0048G031 Amborella trichopoda HOM05D003571 ORTHO05D004193 1.1e-20 103.6 84 61.9
HanXRQChr01g0027351 Helianthus annuus HOM05D003571 ORTHO05D004193 1.8e-20 102.8 62 80.6
Cpa.g.sc390.2 Carica papaya HOM05D003571 ORTHO05D004193 3.1e-20 102.1 59 88.1
Lsat_1_v5_gn_1_53261 Lactuca sativa HOM05D003571 ORTHO05D004193 5.9e-19 97.8 63 79.4
ECA248G2435 Erigeron canadensis HOM05D003571 ORTHO05D004193 2.2e-18 95.9 63 76.2
HanXRQChr11g0350181 Helianthus annuus HOM05D003571 ORTHO05D004193 8.5e-18 94.0 63 81.0
AagrBONN_evm.TU.Sc2ySwM_368.249 Anthoceros agrestis HOM05D003571 ORTHO05D004193 1.1e-17 93.6 63 73.0
MSTRG.5747 Avicennia marina HOM05D003571 ORTHO05D004193 3.2e-17 92.0 65 70.8
Os03g0700800 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 4.2e-17 91.7 66 71.2
HPP92_012165 Vanilla planifolia HOM05D003571 ORTHO05D004193 4.2e-17 91.7 58 74.1
Pp3c27_2050 Physcomitrium patens HOM05D003571 ORTHO05D004193 1.6e-16 89.7 74 63.5
SEGI_08907 Sequoiadendron giganteum HOM05D003571 ORTHO05D004193 2.7e-16 89.0 69 65.2
Os07g0155600 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 4.6e-16 88.2 58 75.9
Os07g0156732 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 4.6e-16 88.2 58 75.9
Os07g0157401 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 4.6e-16 88.2 58 75.9
Zm00001eb119690 Zea mays HOM05D003571 ORTHO05D004193 6.1e-16 87.8 60 73.3
MSTRG.26704 Avicennia marina HOM05D003571 ORTHO05D004193 7.9e-16 87.4 81 60.5
Pp3c16_16830 Physcomitrium patens HOM05D003571 ORTHO05D004193 3.0e-15 85.5 54 75.9
SMO334G0103 Selaginella moellendorffii HOM05D003571 ORTHO05D004193 3.3e-14 82.0 59 67.8
Mapoly0001s0226 Marchantia polymorpha HOM05D003571 ORTHO05D004193 2.8e-13 79.0 51 72.5
AUR62022345 Chenopodium quinoa HOM05D003571 ORTHO05D004193 8.2e-13 77.4 52 73.1
Actinidia19664 Actinidia chinensis HOM05D003571 ORTHO05D004193 4.5e-11 71.6 49 73.5
Lalb_Chr01g0018771 Lupinus albus HOM05D003571 ORTHO05D004193 1.7e-10 69.7 47 66.0


User provided reference genes

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