Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005482 Carpinus fangiana HOM05D006764 ORTHO05D008516 2.8e-82 308.5 153 100.0
Haze_01822 Corylus avellana HOM05D006764 ORTHO05D008516 2.2e-63 245.7 140 87.9
QL02p099872 Quercus lobata HOM05D006764 ORTHO05D008516 1.1e-57 226.9 137 83.9
CiPaw.05G051400 Carya illinoinensis HOM05D006764 ORTHO05D008516 1.3e-55 219.9 122 88.5
Duzib132G0537 Durio zibethinus HOM05D006764 ORTHO05D008516 2.6e-51 205.7 123 80.5
TAR628G0031 Trochodendron aralioides HOM05D006764 ORTHO05D008516 7.0e-49 197.6 122 74.6
COL.COLO4_17757 Corchorus olitorius HOM05D006764 ORTHO05D008516 1.6e-48 196.4 131 74.0
Potri.004G222300 Populus trichocarpa HOM05D006764 ORTHO05D008516 5.9e-48 194.5 122 75.4
Gohir.A04G130100 Gossypium hirsutum HOM05D006764 ORTHO05D008516 2.2e-47 192.6 122 74.6
Prupe.1G576600 Prunus persica HOM05D006764 ORTHO05D008516 2.2e-47 192.6 122 76.2
Dinv01845 Davidia involucrata HOM05D006764 ORTHO05D008516 1.1e-46 190.3 122 73.8
Thecc.02G025400 Theobroma cacao HOM05D006764 ORTHO05D008516 1.1e-46 190.3 122 76.2
Gorai.012G166600 Gossypium raimondii HOM05D006764 ORTHO05D008516 1.9e-46 189.5 122 73.0
GSVIVG01023281001 Vitis vinifera HOM05D006764 ORTHO05D008516 1.9e-46 189.5 122 74.6
PGR042G2798 Punica granatum HOM05D006764 ORTHO05D008516 3.2e-46 188.7 122 75.4
Gohir.D04G175300 Gossypium hirsutum HOM05D006764 ORTHO05D008516 5.5e-46 188.0 122 73.0
MD08G1240100 Malus domestica HOM05D006764 ORTHO05D008516 7.2e-46 187.6 122 73.8
Sabra01G0168400 Salix brachista HOM05D006764 ORTHO05D008516 9.4e-46 187.2 122 72.1
arahy.Tifrunner.gnm1.ann1.0E87YT Arachis hypogaea HOM05D006764 ORTHO05D008516 1.2e-45 186.8 122 73.8
Manes.07G022500 Manihot esculenta HOM05D006764 ORTHO05D008516 1.6e-45 186.4 123 74.8
arahy.Tifrunner.gnm1.ann1.FMX4TW Arachis hypogaea HOM05D006764 ORTHO05D008516 2.1e-45 186.0 122 73.8
Ciclev10001742m.g Citrus clementina HOM05D006764 ORTHO05D008516 1.2e-43 180.3 133 72.2
Medtr2g006100 Medicago truncatula HOM05D006764 ORTHO05D008516 2.0e-43 179.5 122 70.5
Sc16g0001680 Simmondsia chinensis HOM05D006764 ORTHO05D008516 2.0e-43 179.5 122 70.5
Ca_00050_v3 Cicer arietinum L. HOM05D006764 ORTHO05D008516 2.6e-43 179.1 122 69.7
FvH4_5g28680 Fragaria vesca HOM05D006764 ORTHO05D008516 4.4e-43 178.3 122 72.1
RcHm_v2.0_Chr7g0220831 Rosa chinensis HOM05D006764 ORTHO05D008516 4.4e-43 178.3 131 69.5
Glyma.16G004200 Glycine max HOM05D006764 ORTHO05D008516 7.5e-43 177.6 122 70.5
TPR.G2075 Trifolium pratense HOM05D006764 ORTHO05D008516 7.5e-43 177.6 122 70.5
Atru.chr6.751 Acer truncatum HOM05D006764 ORTHO05D008516 9.8e-43 177.2 122 70.5
Glyma.12G168200 Glycine max HOM05D006764 ORTHO05D008516 1.3e-42 176.8 122 69.7
Lj6g0021331 Lotus japonicus HOM05D006764 ORTHO05D008516 1.3e-42 176.8 122 72.1
Eucgr.G00355 Eucalyptus grandis HOM05D006764 ORTHO05D008516 2.2e-42 176.0 122 69.7
Hund12938 Selenicereus undatus HOM05D006764 ORTHO05D008516 3.7e-42 175.3 127 68.5
AUR62042713 Chenopodium quinoa HOM05D006764 ORTHO05D008516 8.3e-42 174.1 122 70.5
MD15G1432200 Malus domestica HOM05D006764 ORTHO05D008516 8.3e-42 174.1 122 69.7
VMungo0540G1274 Vigna mungo HOM05D006764 ORTHO05D008516 1.1e-41 173.7 122 68.0
MELO3C011834.2 Cucumis melo HOM05D006764 ORTHO05D008516 1.8e-41 172.9 122 69.7
ClCG11G013370 Citrullus lanatus HOM05D006764 ORTHO05D008516 2.4e-41 172.6 122 69.7
Actinidia39013 Actinidia chinensis HOM05D006764 ORTHO05D008516 3.1e-41 172.2 122 68.0
EL10Ac6g14065 Beta vulgaris HOM05D006764 ORTHO05D008516 3.1e-41 172.2 122 68.9
Psat1g221840 Pisum sativum HOM05D006764 ORTHO05D008516 3.1e-41 172.2 122 68.0
SGA_v2.0_scaffold304G47898 Striga asiatica HOM05D006764 ORTHO05D008516 5.4e-41 171.4 122 68.9
CsaV3_5G029880 Cucumis sativus L. HOM05D006764 ORTHO05D008516 9.2e-41 170.6 122 68.9
Phvul.006G217900 Phaseolus vulgaris HOM05D006764 ORTHO05D008516 9.2e-41 170.6 122 69.7
AL6G41260 Arabidopsis lyrata HOM05D006764 ORTHO05D008516 2.7e-40 169.1 122 65.6
Peaxi162Scf00002g00261 Petunia axillaris HOM05D006764 ORTHO05D008516 2.7e-40 169.1 123 66.7
vmacro01728 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 2.7e-40 169.1 122 64.8
ECA234G3405 Erigeron canadensis HOM05D006764 ORTHO05D008516 3.5e-40 168.7 122 67.2
THA.LOC104807147 Tarenaya hassleriana HOM05D006764 ORTHO05D008516 3.5e-40 168.7 135 64.4
CARHR260060 Cardamine hirsuta HOM05D006764 ORTHO05D008516 5.9e-40 167.9 122 65.6
Sopen10g013910 Solanum pennellii HOM05D006764 ORTHO05D008516 7.7e-40 167.5 122 64.8
CSS0013576 Camellia sinensis var. sinensis HOM05D006764 ORTHO05D008516 1.0e-39 167.2 122 68.9
Cc02_g22970 Coffea canephora HOM05D006764 ORTHO05D008516 1.0e-39 167.2 122 64.8
CANSAT54G1059 Cannabis sativa HOM05D006764 ORTHO05D008516 1.3e-39 166.8 133 61.7
HanXRQChr10g0294521 Helianthus annuus HOM05D006764 ORTHO05D008516 1.7e-39 166.4 122 64.8
Lalb_Chr18g0061021 Lupinus albus HOM05D006764 ORTHO05D008516 2.3e-39 166.0 122 67.2
Carub.0006s2639 Capsella rubella HOM05D006764 ORTHO05D008516 3.8e-39 165.2 122 63.9
Cpa.g.sc30.47 Carica papaya HOM05D006764 ORTHO05D008516 3.8e-39 165.2 103 74.8
AT4G06676 Arabidopsis thaliana HOM05D006764 ORTHO05D008516 5.0e-39 164.9 122 64.8
CAN.G1108.5 Capsicum annuum HOM05D006764 ORTHO05D008516 5.0e-39 164.9 122 63.9
Solyc10g044910.2 Solanum lycopersicum HOM05D006764 ORTHO05D008516 6.6e-39 164.5 122 63.9
BcaB01g01263 Brassica carinata HOM05D006764 ORTHO05D008516 8.6e-39 164.1 122 63.9
Thhalv10028801m.g Eutrema salsugineum HOM05D006764 ORTHO05D008516 1.1e-38 163.7 122 63.9
Oeu023412.2 Olea europaea HOM05D006764 ORTHO05D008516 1.9e-38 162.9 123 67.5
Rhsim11G0125600 Rhododendron simsii HOM05D006764 ORTHO05D008516 1.9e-38 162.9 122 63.1
Migut.B00802 Erythranthe guttata HOM05D006764 ORTHO05D008516 7.3e-38 161.0 122 66.4
Aa31LG3G14080 Aethionema arabicum HOM05D006764 ORTHO05D008516 1.6e-37 159.8 121 64.5
BcaC04g20869 Brassica carinata HOM05D006764 ORTHO05D008516 1.6e-37 159.8 126 60.3
BolC9t56687H Brassica oleracea HOM05D006764 ORTHO05D008516 1.6e-37 159.8 126 60.3
PSO017G2259 Papaver somniferum HOM05D006764 ORTHO05D008516 3.6e-37 158.7 122 65.6
C09p38380 Brassica napus HOM05D006764 ORTHO05D008516 4.7e-37 158.3 122 61.5
PSO170G2545 Papaver somniferum HOM05D006764 ORTHO05D008516 6.1e-37 157.9 122 65.6
Lsat_1_v5_gn_5_103781 Lactuca sativa HOM05D006764 ORTHO05D008516 1.4e-36 156.8 129 62.8
A09p30490 Brassica napus HOM05D006764 ORTHO05D008516 1.8e-36 156.4 127 59.8
BraA09t38619Z Brassica rapa HOM05D006764 ORTHO05D008516 1.8e-36 156.4 127 59.8
TWI59G0639 Tripterygium wilfordii HOM05D006764 ORTHO05D008516 1.8e-36 156.4 131 63.4
Sed0008550 Sechium edule HOM05D000755 ORTHO05D000642 1.2e-35 153.7 122 64.8
AUR62014213 Chenopodium quinoa HOM05D006764 ORTHO05D008516 2.0e-35 152.9 123 65.9
Nn5g27693 Nelumbo nucifera HOM05D006764 ORTHO05D008516 5.7e-35 151.4 122 63.9
SHI04828 Sapria himalayana HOM05D006764 ORTHO05D008516 1.3e-34 150.2 123 61.8
HPP92_009268 Vanilla planifolia HOM05D006764 ORTHO05D008516 6.4e-34 147.9 122 58.2
Nitab4.5_0008098g0020 Nicotiana tabacum HOM05D006764 ORTHO05D008516 3.2e-33 145.6 130 59.2
Nitab4.5_0000667g0120 Nicotiana tabacum HOM05D006764 ORTHO05D008516 2.0e-32 142.9 130 59.2
ATR0709G017 Amborella trichopoda HOM05D006764 ORTHO05D008516 3.5e-32 142.1 139 54.0
Aqoxy6G00131 Aquilegia oxysepala HOM05D006764 ORTHO05D008516 3.5e-32 142.1 122 54.1
MBI17_g21477_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 6.6e-31 137.9 122 56.6
SalBow7G3863 Salvia bowleyana HOM05D006764 ORTHO05D008516 3.3e-30 135.6 122 59.0
FAN08G1175 Fragaria x ananassa HOM05D006764 ORTHO05D008516 3.1e-28 129.0 122 57.4
FAN18G3575 Fragaria x ananassa HOM05D006764 ORTHO05D008516 3.1e-28 129.0 122 57.4
FAN13G1303 Fragaria x ananassa HOM05D006764 ORTHO05D008516 4.0e-28 128.6 151 49.7
Lj5A261T39 Lonicera japonica HOM05D006764 ORTHO05D008516 2.2e-26 122.9 106 60.4
unitig_748.g8283 Utricularia gibba HOM05D006764 ORTHO05D008516 6.4e-26 121.3 138 50.0
SEGI_07291 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 8.3e-26 120.9 133 50.4
SEGI_28644 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 3.2e-25 119.0 94 61.7
Mapoly0025s0102 Marchantia polymorpha HOM05D006764 ORTHO05D008516 9.2e-25 117.5 122 45.1
Pp3c15_15530 Physcomitrium patens HOM05D006764 ORTHO05D008516 2.0e-24 116.3 126 48.4
FAN04G0462 Fragaria x ananassa HOM05D006764 ORTHO05D008516 7.8e-24 114.4 58 84.5
SMO367G0572 Selaginella moellendorffii HOM05D006764 ORTHO05D008516 1.6e-21 106.7 102 49.0
Sp6g10710 Schrenkiella parvula HOM05D006764 ORTHO05D008516 6.8e-20 101.3 134 44.8
CBR_g19125 Chara braunii HOM05D006764 ORTHO05D008516 1.2e-19 100.5 160 36.9
Zm00001eb082660 Zea mays HOM05D006764 ORTHO05D008516 2.1e-16 89.7 99 51.5
Cre01.g032350 Chlamydomonas reinhardtii HOM05D006764 ORTHO05D008516 1.0e-15 87.4 125 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3284 Anthoceros agrestis HOM05D006764 ORTHO05D008516 3.9e-15 85.5 98 43.9
arahy.Tifrunner.gnm1.ann1.7FKN0D Arachis hypogaea HOM05D006764 ORTHO05D008516 6.0e-08 61.6 57 59.6
Cc00_g10410 Coffea canephora HOM05D006764 ORTHO05D008516 2.3e-07 59.7 42 66.7
MCO04G067 Micromonas commoda HOM05D006764 ORTHO05D008516 1.1e-06 57.4 89 37.1


User provided reference genes

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