Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 2127.1 1079 100.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1892.1 1112 86.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1876.3 1087 87.1
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1845.5 1089 86.0
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1841.6 1090 84.8
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1840.1 1090 84.7
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1833.9 1089 85.2
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1832.4 1093 84.9
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1830.5 1092 84.2
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1828.5 1090 85.0
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1825.8 1088 84.9
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1821.6 1090 84.4
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1816.2 1089 83.5
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1811.6 1104 83.2
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1808.9 1088 83.8
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1807.3 1092 83.8
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1804.3 1088 83.5
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1798.5 1094 83.5
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1797.7 1091 83.6
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1796.9 1089 83.7
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1792.7 1086 82.4
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1791.2 1087 83.3
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1790.8 1081 83.1
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1785.8 1089 82.6
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1785.8 1090 82.9
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1779.6 1089 81.7
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1778.8 1093 82.8
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1776.5 1079 81.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1770.4 1079 81.4
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1767.3 1091 83.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1766.5 1079 81.2
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1766.1 1079 81.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1763.0 1130 79.7
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1762.7 1089 81.4
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1761.9 1088 81.6
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1759.2 1074 83.0
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1755.0 1093 80.1
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1752.3 1079 81.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1751.9 1092 81.0
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1751.5 1095 80.2
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1749.6 1082 81.1
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1749.6 1082 81.8
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1746.1 1092 80.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1745.7 1180 76.1
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1744.6 1071 83.1
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1741.1 1092 80.6
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1736.5 1120 79.2
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1736.1 1085 80.2
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1734.5 1096 79.7
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1734.2 1084 81.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1731.5 1093 80.5
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1728.0 1012 84.1
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1724.1 1006 84.5
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1721.4 1094 79.6
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1718.7 1091 79.8
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1718.4 1079 80.1
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1716.8 1087 80.5
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1716.0 1083 80.1
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1713.4 1090 78.2
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1713.0 1085 78.5
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1708.7 1114 77.4
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1707.6 1089 79.2
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1697.2 1082 79.8
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1695.6 1065 80.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1691.4 1084 78.3
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1690.6 1084 77.7
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1689.1 1072 78.8
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1688.7 1084 77.8
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1686.4 1084 77.5
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1685.2 1081 78.5
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1684.8 1087 78.1
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1682.5 1084 77.9
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1682.2 1084 77.8
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1681.0 1072 78.9
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1678.7 1083 78.5
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1678.7 1078 77.8
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1678.7 1079 79.1
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1677.5 1085 77.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1676.4 1099 81.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1675.2 1099 81.4
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1081 77.9
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1673.3 1081 77.8
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1669.1 1072 78.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1668.7 1204 71.6
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1667.5 1099 76.6
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1667.1 1083 77.1
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1081 77.4
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1665.2 1175 73.0
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1077 77.5
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1081 77.6
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1081 77.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1084 77.2
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1655.2 1081 77.2
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1647.1 1043 78.3
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1647.1 1103 75.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1645.9 1080 76.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1645.9 1069 77.2
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1069 77.5
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1074 77.0
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1639.4 1086 76.3
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1074 76.7
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1630.5 1093 75.8
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 1153 72.3
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1066 77.7
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1082 76.2
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1612.8 1113 73.9
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1595.9 1123 73.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1587.0 1065 75.4
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1552.7 1091 76.0
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1546.9 914 83.4
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1545.8 969 78.0
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1541.6 869 87.0
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1501.5 1020 74.2
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1475.3 1014 70.9
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1455.7 1031 68.8
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1380.5 801 84.8
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1380.5 957 69.9
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1315.1 1005 65.2
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1279.2 1071 63.0
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1240.7 749 84.0
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1233.0 748 81.1
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1206.4 845 72.2
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1173.3 722 80.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1134.8 1049 54.8
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1125.5 969 55.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1099.0 739 74.3
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1098.6 989 55.7
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 7.3e-302 1040.8 881 61.7
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 9.9e-283 977.2 888 60.5
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.4e-273 946.8 777 60.4
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-269 932.9 596 79.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 4.9e-266 921.8 580 76.0
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 7.7e-243 844.7 987 44.7
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.6e-219 767.3 671 57.8
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.7e-213 747.3 455 83.1
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.2e-213 746.9 642 61.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 9.2e-212 741.5 705 56.6
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 9.5e-193 678.3 419 80.9
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.1e-186 656.0 507 70.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.4e-180 637.9 532 64.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.4e-180 637.9 408 77.7
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.2e-172 610.1 478 69.2
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 2.0e-166 590.9 347 86.5
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.3e-162 577.4 1031 37.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 7.6e-158 562.4 393 69.0
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.7e-136 491.5 397 64.2
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 5.3e-135 486.5 405 64.0
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.8e-130 471.5 309 74.1
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.0e-130 470.7 329 69.6
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 4.8e-112 410.2 991 29.9
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.4e-111 408.7 283 76.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.2e-107 395.6 227 85.9
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.5e-105 388.7 949 29.0
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.1e-103 380.9 958 28.6
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.8e-91 341.3 904 29.5
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.4e-79 302.4 154 89.0
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.6e-59 235.7 222 55.0
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 4.0e-58 231.1 870 24.0
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 9.0e-58 229.9 332 39.2
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 6.0e-54 217.2 310 45.2
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.2e-46 193.0 124 78.2
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.6e-46 192.6 220 55.0
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.6e-44 183.3 176 58.0
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.1e-42 179.9 154 61.7
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 3.1e-42 178.3 152 59.2
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 3.8e-40 171.4 273 38.8
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 6.0e-38 164.1 125 67.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 3.9e-37 161.4 461 28.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.1e-35 155.6 149 56.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.9e-31 142.5 162 42.6
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 5.5e-31 141.0 162 58.0
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.6e-27 129.4 431 25.3
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.6e-25 122.1 296 26.7
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.0e-24 120.2 111 53.2
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.7e-24 119.4 98 63.3
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.3e-18 97.8 83 61.4
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 3.0e-13 82.0 56 69.6
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.6e-12 79.0 131 42.0
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.4e-10 73.2 51 66.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.8e-10 72.8 44 77.3
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.7e-08 66.2 77 46.8
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 3.8e-08 65.1 36 83.3
ClCG02G005830 Citrullus lanatus HOM05D003855 ORTHO05D004722 7.2e-07 60.8 41 70.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 6.1e-06 57.8 174 35.6


User provided reference genes

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