Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 6.1e-230 800.4 394 100.0
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 3.2e-223 778.1 393 97.7
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.1e-206 722.2 393 89.6
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 5.9e-201 704.1 394 87.6
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 2.7e-193 678.7 394 83.5
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 8.6e-192 673.7 394 82.7
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.1e-191 673.3 394 83.0
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 5.6e-191 671.0 394 82.2
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 3.6e-190 668.3 394 82.7
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 2.3e-189 665.6 397 82.1
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 6.4e-187 657.5 407 78.9
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.7e-184 649.4 405 78.8
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.3e-184 649.0 404 78.5
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 6.6e-184 647.5 401 80.3
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 2.5e-183 645.6 401 79.3
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.2e-182 643.3 400 78.0
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.6e-182 642.9 404 79.2
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 2.8e-182 642.1 404 77.5
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 8.9e-181 637.1 394 78.7
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 8.9e-181 637.1 403 79.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.2e-180 636.7 403 78.9
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 2.2e-179 632.5 413 76.0
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 8.3e-179 630.6 404 77.0
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 2.4e-178 629.0 394 78.7
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 4.1e-178 628.2 394 77.2
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 4.1e-178 628.2 401 75.8
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 2.7e-177 625.5 429 74.6
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 7.8e-177 624.0 386 79.3
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.7e-176 622.9 395 75.7
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.7e-176 622.9 395 75.7
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.5e-175 619.8 407 74.9
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.9e-175 619.4 395 75.2
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 3.3e-175 618.6 402 75.1
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 4.3e-175 618.2 395 75.2
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 5.6e-175 617.8 406 74.6
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 7.3e-175 617.5 394 73.9
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 7.3e-175 617.5 403 74.2
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 9.5e-175 617.1 394 74.6
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 2.8e-174 615.5 402 75.9
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 2.8e-174 615.5 405 76.0
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 3.6e-174 615.1 395 74.7
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 6.2e-174 614.4 394 75.1
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.1e-173 613.6 372 77.4
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 2.3e-173 612.5 400 75.8
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.3e-173 612.5 402 76.1
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 3.1e-173 612.1 394 73.4
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 6.8e-173 610.9 395 75.4
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 6.8e-173 610.9 395 75.2
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 3.4e-172 608.6 399 75.2
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 4.4e-172 608.2 406 74.1
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.3e-171 606.7 397 74.8
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.3e-171 606.7 402 74.6
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 2.9e-171 605.5 393 75.1
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 8.3e-171 604.0 356 81.2
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 2.4e-170 602.4 393 74.8
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 2.4e-170 602.4 398 74.6
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 4.1e-170 601.7 397 73.8
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 2.1e-169 599.4 387 75.7
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 2.1e-169 599.4 387 75.7
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.7e-169 599.0 347 81.3
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.5e-169 598.6 394 73.9
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 4.6e-169 598.2 401 72.8
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 6.0e-169 597.8 405 73.3
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 1.0e-168 597.0 406 73.2
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 2.3e-168 595.9 387 75.5
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.0e-168 595.5 401 74.1
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.9e-167 592.8 337 84.6
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 2.5e-167 592.4 405 73.3
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.2e-166 590.1 394 73.4
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.6e-166 589.7 353 80.2
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.1e-166 589.3 394 73.6
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 2.8e-166 589.0 352 81.2
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 4.7e-166 588.2 345 83.5
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 4.7e-166 588.2 391 76.5
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 6.2e-166 587.8 407 74.0
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 4.0e-165 585.1 405 73.3
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 6.8e-165 584.3 405 73.1
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 6.8e-165 584.3 402 71.1
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.7e-163 579.7 422 68.5
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 3.8e-163 578.6 392 71.9
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 6.4e-163 577.8 381 73.5
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.9e-162 576.2 353 78.8
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 5.4e-162 574.7 415 70.6
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.2e-161 573.5 403 72.2
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 3.5e-161 572.0 397 72.3
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.0e-160 570.5 345 81.7
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.3e-160 570.1 402 72.4
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.0e-160 568.9 377 75.6
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.5e-159 566.6 327 82.3
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.2e-158 561.2 377 74.8
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 8.1e-158 560.8 404 69.8
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 4.0e-157 558.5 353 77.3
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 2.6e-156 555.8 314 82.8
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 9.9e-156 553.9 351 76.4
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 6.4e-155 551.2 407 70.5
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.4e-154 550.1 349 76.5
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.4e-154 549.3 439 65.1
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 9.3e-154 547.4 395 68.9
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.2e-153 547.0 353 75.6
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.1e-151 540.4 426 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 2.5e-151 539.3 370 70.5
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.3e-150 537.0 356 72.8
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 2.1e-150 536.2 385 69.1
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 8.1e-150 534.3 381 69.3
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 3.1e-149 532.3 356 75.6
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 4.0e-149 531.9 344 74.7
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 4.0e-149 531.9 348 73.3
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 5.3e-149 531.6 356 72.2
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.5e-148 530.0 314 80.9
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.4e-148 528.9 404 66.6
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 3.2e-146 522.3 463 59.8
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 2.5e-143 512.7 343 70.6
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 9.6e-143 510.8 398 65.8
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.7e-142 508.8 573 49.6
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.8e-134 481.9 292 79.1
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 3.1e-133 479.2 344 67.4
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.5e-129 465.7 387 63.8
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.5e-127 460.3 346 65.0
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 2.1e-121 439.9 330 67.6
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 5.4e-77 292.4 194 74.2
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 3.4e-71 273.1 373 45.0
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 9.2e-69 265.0 147 82.3
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 3.7e-62 243.0 198 58.6
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 9.5e-58 228.4 301 47.2
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 7.5e-55 218.8 190 61.6
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.5e-52 209.9 143 70.6
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 1.6e-44 184.5 112 79.5
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.4e-39 166.8 112 72.3
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.0e-32 143.3 81 80.2
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.5e-31 141.4 344 29.4
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.4e-29 134.8 87 74.7
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 8.1e-25 119.0 66 78.8
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.6e-17 94.7 53 81.1
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 9.3e-13 79.0 132 38.6
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 3.0e-11 73.9 64 54.7
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.5e-10 71.6 45 73.3


User provided reference genes

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