Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.1e-287 992.6 528 100.0
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.6e-247 857.4 490 90.8
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 7.6e-228 793.9 489 85.3
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.6e-225 786.2 492 86.2
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 2.7e-217 758.8 484 80.6
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 7.9e-217 757.3 491 79.4
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.0e-216 756.9 488 79.9
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 2.3e-216 755.7 489 79.8
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.9e-216 755.0 489 80.0
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.5e-215 753.1 492 78.5
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 7.4e-215 750.7 494 78.3
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 9.7e-215 750.4 495 79.6
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.3e-214 750.0 498 79.5
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 3.7e-214 748.4 491 79.8
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 4.8e-214 748.0 482 79.7
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.1e-213 746.9 492 82.3
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 2.4e-213 745.7 493 79.7
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 2.6e-212 742.3 439 85.2
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 3.4e-212 741.9 492 79.1
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.5e-212 741.5 441 85.3
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.0e-211 740.3 491 77.4
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.7e-211 739.6 492 78.7
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 2.2e-211 739.2 490 77.3
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 2.9e-211 738.8 490 76.5
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.9e-211 738.8 496 77.4
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 3.8e-211 738.4 492 78.3
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 5.0e-211 738.0 489 78.1
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.2e-210 734.2 489 77.3
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 9.4e-210 733.8 434 85.9
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 2.1e-209 732.6 432 86.3
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.7e-209 732.3 489 77.1
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 7.9e-209 730.7 489 77.7
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.0e-208 730.3 435 84.8
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 1.4e-208 729.9 490 76.7
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.8e-208 729.6 441 82.1
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 2.3e-208 729.2 436 83.0
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.3e-208 729.2 491 77.6
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 3.0e-208 728.8 489 76.5
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 3.9e-208 728.4 448 82.4
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 5.1e-208 728.0 489 75.7
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 8.8e-208 727.2 449 82.0
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 1.1e-207 726.9 491 77.2
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 1.9e-207 726.1 492 76.4
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.3e-207 724.9 449 80.8
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.3e-207 724.9 451 82.0
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 5.7e-207 724.5 439 83.6
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 9.7e-207 723.8 443 81.9
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 9.7e-207 723.8 439 83.8
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 2.2e-206 722.6 489 75.5
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.2e-206 722.6 489 76.1
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.2e-206 722.6 435 83.4
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 2.2e-206 722.6 442 82.4
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.8e-206 722.2 492 75.6
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 4.8e-206 721.5 465 78.1
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 4.8e-206 721.5 439 83.4
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.4e-205 719.2 468 79.3
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.4e-205 719.2 447 81.4
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 9.1e-205 717.2 487 76.0
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.2e-204 716.8 434 83.2
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 2.6e-204 715.7 439 82.7
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 1.7e-203 713.0 442 81.4
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 6.5e-203 711.1 439 81.8
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 8.5e-203 710.7 447 79.2
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.1e-202 710.3 439 81.5
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.4e-202 709.9 448 81.0
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.4e-202 709.9 472 77.1
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.5e-202 709.1 486 75.9
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.5e-202 709.1 447 79.4
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.2e-201 706.8 489 76.3
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 2.1e-201 706.1 450 79.6
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 4.7e-201 704.9 435 81.4
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 6.1e-201 704.5 438 80.1
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 1.8e-200 703.0 482 74.3
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 2.3e-200 702.6 439 79.3
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 2.3e-200 702.6 446 80.0
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 3.9e-200 701.8 437 79.6
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 3.9e-200 701.8 437 79.6
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 3.9e-200 701.8 439 79.3
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 5.1e-200 701.4 439 79.5
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.1e-200 701.4 489 74.8
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 5.1e-200 701.4 452 79.9
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 6.7e-200 701.0 445 78.4
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 6.7e-200 701.0 439 78.8
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.7e-200 701.0 434 82.0
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 8.8e-200 700.7 437 79.6
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 8.8e-200 700.7 437 79.9
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 8.8e-200 700.7 439 78.8
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 8.8e-200 700.7 437 79.9
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.1e-199 700.3 436 81.0
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 2.0e-199 699.5 436 80.0
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 3.3e-199 698.7 437 79.4
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 3.3e-199 698.7 439 79.7
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 4.4e-199 698.4 434 80.0
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.7e-199 698.0 486 74.9
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 1.3e-198 696.8 445 78.2
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.3e-198 696.8 465 77.2
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 3.7e-198 695.3 439 78.1
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 3.7e-198 695.3 439 78.1
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 9.1e-197 690.6 436 78.7
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 9.1e-197 690.6 439 77.7
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 9.1e-197 690.6 483 73.5
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.5e-196 688.3 436 78.4
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.7e-195 686.4 435 80.2
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 5.0e-195 684.9 432 80.1
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.1e-194 683.7 435 78.9
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 1.4e-194 683.3 435 78.6
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 2.5e-194 682.6 435 78.2
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.6e-193 679.9 431 78.7
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.6e-193 679.9 435 77.9
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 2.1e-193 679.5 448 78.1
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 8.0e-193 677.6 457 74.8
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 4.4e-191 671.8 431 77.7
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.9e-187 659.1 437 75.5
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 1.5e-186 656.8 441 74.8
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 1.6e-185 653.3 413 79.7
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.2e-182 641.0 386 83.2
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.7e-177 625.9 432 71.1
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 5.2e-176 621.7 435 73.3
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.8e-173 613.2 432 70.4
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 3.3e-170 602.4 427 71.9
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 9.5e-170 600.9 461 66.4
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 2.0e-167 593.2 473 65.1
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 5.4e-165 585.1 430 68.1
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 2.1e-161 573.2 427 67.2
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 3.7e-158 562.4 438 65.3
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.4e-157 560.5 359 78.0
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.1e-153 546.6 487 64.3
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 4.0e-152 542.3 428 65.7
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.4e-141 506.5 318 80.5
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 2.1e-140 503.4 315 80.3
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.6e-137 493.8 321 82.2
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 3.7e-113 412.9 233 86.7
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.5e-109 400.2 330 65.2
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.1e-108 397.1 445 49.7
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 6.2e-105 385.6 258 74.8
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 3.1e-104 383.3 258 76.4
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.4e-101 374.4 289 67.1
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.4e-96 357.8 182 99.5
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.4e-91 341.3 223 88.3
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 5.9e-87 325.9 252 69.8
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 6.1e-84 315.8 177 87.0
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.0e-83 313.5 405 49.9
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 5.3e-80 302.8 201 77.1
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 9.1e-64 248.8 217 61.8
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.2e-63 248.4 182 69.8
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.0e-63 247.7 295 45.8
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 4.5e-63 246.5 219 61.6
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 1.0e-62 245.4 422 37.7
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-61 241.9 217 60.4
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 7.2e-61 239.2 241 56.8
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 2.6e-58 230.7 122 92.6
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 4.1e-56 223.4 215 57.2
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.4e-50 203.8 116 86.2
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.7e-41 174.9 95 90.5
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 5.0e-38 163.3 174 54.6
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 6.6e-38 162.9 87 90.8
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 5.2e-27 126.7 133 45.9
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.7e-25 121.7 158 48.1
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 5.4e-24 116.7 76 71.1
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 4.3e-21 107.1 67 77.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 8.1e-20 102.8 208 37.5
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.8e-19 101.7 122 49.2
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 5.2e-19 100.1 59 84.7
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 6.8e-19 99.8 137 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.7e-15 87.8 66 68.2
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.0e-14 85.9 57 71.9
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.3e-12 79.0 45 86.7
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 2.4e-11 74.7 49 75.5
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 1.5e-10 72.0 48 75.0
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 2.6e-10 71.2 75 52.0
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.3e-09 68.9 69 58.0
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 3.8e-09 67.4 46 69.6
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.2e-07 62.4 37 83.8
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 1.7e-06 58.5 55 61.8
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 3.0e-06 57.8 31 80.6


User provided reference genes

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