Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005392 Carpinus fangiana HOM05D008002 ORTHO05D010148 7.1e-118 427.2 201 100.0
Haze_01959 Corylus avellana HOM05D008002 ORTHO05D010148 1.5e-88 329.7 192 82.8
Haze_01969 Corylus avellana HOM05D008002 ORTHO05D010148 2.4e-65 252.7 188 67.6
Thecc.02G147800 Theobroma cacao HOM05D008002 ORTHO05D010148 1.3e-58 230.3 200 57.0
MD05G1143100 Malus domestica HOM05D008002 ORTHO05D010148 1.7e-58 229.9 198 59.6
CiPaw.05G094700 Carya illinoinensis HOM05D008002 ORTHO05D010148 2.2e-58 229.6 190 60.5
CANSAT25G0111 Cannabis sativa HOM05D008002 ORTHO05D010148 8.3e-58 227.6 201 58.7
QL11p056798 Quercus lobata HOM05D000114 ORTHO05D009898 1.8e-57 226.5 219 55.3
MD10G1142900 Malus domestica HOM05D008002 ORTHO05D010148 1.2e-56 223.8 202 57.9
Actinidia17988 Actinidia chinensis HOM05D008002 ORTHO05D010148 1.6e-56 223.4 187 59.9
Duzib132G1147 Durio zibethinus HOM05D008002 ORTHO05D010148 7.8e-56 221.1 208 54.8
FAN24G1487 Fragaria x ananassa HOM05D008002 ORTHO05D010148 2.3e-55 219.5 195 57.9
FvH4_2g17020 Fragaria vesca HOM05D008002 ORTHO05D010148 2.9e-55 219.2 203 56.2
FAN27G2383 Fragaria x ananassa HOM05D008002 ORTHO05D010148 2.9e-55 219.2 203 56.2
Actinidia20583 Actinidia chinensis HOM05D008002 ORTHO05D010148 8.6e-55 217.6 187 58.8
Prupe.8G181900 Prunus persica HOM05D008002 ORTHO05D010148 1.9e-54 216.5 199 56.3
Duzib248G0441 Durio zibethinus HOM05D008002 ORTHO05D010148 4.3e-54 215.3 204 54.4
RcHm_v2.0_Chr6g0281201 Rosa chinensis HOM05D008002 ORTHO05D010148 2.1e-53 213.0 204 56.4
FAN15G1289 Fragaria x ananassa HOM05D008002 ORTHO05D010148 2.8e-53 212.6 203 54.7
Eucgr.I01542 Eucalyptus grandis HOM05D008002 ORTHO05D010148 3.6e-53 212.2 204 55.4
Gorai.012G138300 Gossypium raimondii HOM05D008002 ORTHO05D010148 3.1e-52 209.1 201 54.2
Gohir.A04G111300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 5.2e-52 208.4 201 53.7
Potri.004G208200 Populus trichocarpa HOM05D008002 ORTHO05D010148 6.8e-52 208.0 183 55.2
Sabra04G0140100 Salix brachista HOM05D008002 ORTHO05D010148 2.6e-51 206.1 182 56.0
Dinv14183 Davidia involucrata HOM05D008002 ORTHO05D010148 5.8e-51 204.9 198 55.1
Gohir.D04G151600 Gossypium hirsutum HOM05D008002 ORTHO05D010148 7.5e-51 204.5 191 55.0
Hund00100 Selenicereus undatus HOM05D008002 ORTHO05D010148 9.8e-51 204.1 192 55.2
TAR376G1088 Trochodendron aralioides HOM05D008002 ORTHO05D010148 9.8e-51 204.1 185 55.7
Atru.chr5.3576 Acer truncatum HOM05D008002 ORTHO05D010148 1.7e-50 203.4 190 55.3
Gohir.D02G193300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 4.9e-50 201.8 203 52.2
GSVIVG01023858001 Vitis vinifera HOM05D008002 ORTHO05D010148 4.9e-50 201.8 199 52.8
COL.COLO4_03847 Corchorus olitorius HOM05D008002 ORTHO05D010148 8.3e-50 201.1 211 51.7
Potri.009G169400 Populus trichocarpa HOM05D008002 ORTHO05D010148 3.2e-49 199.1 183 55.2
Gohir.A03G170200 Gossypium hirsutum HOM05D008002 ORTHO05D010148 5.4e-49 198.4 204 51.5
Gorai.005G216100 Gossypium raimondii HOM05D008002 ORTHO05D010148 5.4e-49 198.4 204 51.5
TWI75G0824 Tripterygium wilfordii HOM05D008002 ORTHO05D010148 2.7e-48 196.1 218 49.5
CsaV3_7G002100 Cucumis sativus L. HOM05D008002 ORTHO05D010148 6.0e-48 194.9 153 61.4
MELO3C015697.2 Cucumis melo HOM05D008002 ORTHO05D010148 2.3e-47 193.0 152 61.2
CiPaw.06G114200 Carya illinoinensis HOM05D008002 ORTHO05D010148 3.0e-47 192.6 199 50.3
Oeu006116.1 Olea europaea HOM05D008002 ORTHO05D010148 2.5e-46 189.5 204 48.5
Sc08g0002060 Simmondsia chinensis HOM05D008002 ORTHO05D010148 7.3e-46 188.0 199 51.8
PGR142G3621 Punica granatum HOM05D008002 ORTHO05D010148 3.6e-45 185.7 207 52.7
Nn2g12628 Nelumbo nucifera HOM05D008002 ORTHO05D010148 4.7e-45 185.3 188 51.1
Rhsim11G0198500 Rhododendron simsii HOM05D008002 ORTHO05D010148 4.7e-45 185.3 172 53.5
Nn8g40377 Nelumbo nucifera HOM05D008002 ORTHO05D010148 2.0e-43 179.9 187 51.9
Ciclev10029829m.g Citrus clementina HOM05D008002 ORTHO05D010148 3.7e-42 175.6 189 48.1
Sed0014792 Sechium edule HOM05D008002 ORTHO05D010148 4.9e-42 175.3 146 61.0
Gorai.013G065000 Gossypium raimondii HOM05D008002 ORTHO05D010148 9.2e-41 171.0 208 48.1
Gohir.D13G057750 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.2e-40 170.6 208 47.6
Lsat_1_v5_gn_3_48401 Lactuca sativa HOM05D008002 ORTHO05D010148 2.1e-40 169.9 143 57.3
Eucgr.H05000 Eucalyptus grandis HOM05D008002 ORTHO05D010148 1.2e-37 160.6 191 45.0
PSO541G1248 Papaver somniferum HOM05D008002 ORTHO05D010148 1.2e-35 154.1 196 44.9
CSS0003373 Camellia sinensis var. sinensis HOM05D008002 ORTHO05D010148 2.0e-35 153.3 109 67.0
ClCG02G003270 Citrullus lanatus HOM05D008002 ORTHO05D010148 2.0e-35 153.3 130 60.0
Sp7g37530 Schrenkiella parvula HOM05D008002 ORTHO05D010148 4.4e-35 152.1 135 52.6
Carub.0007s0013 Capsella rubella HOM05D008002 ORTHO05D010148 1.4e-33 147.1 140 52.9
Thhalv10027398m.g Eutrema salsugineum HOM05D008002 ORTHO05D010148 7.1e-33 144.8 176 44.9
AT4G38213 Arabidopsis thaliana HOM05D008002 ORTHO05D010148 1.3e-31 140.6 138 50.7
Aqoxy6G02976 Aquilegia oxysepala HOM05D008002 ORTHO05D010148 6.6e-31 138.3 201 42.8
HanXRQChr15g0490081 Helianthus annuus HOM05D008002 ORTHO05D010148 8.1e-29 131.3 107 56.1
SEGI_35818 Sequoiadendron giganteum HOM05D008002 ORTHO05D010148 1.8e-28 130.2 143 45.5
Zm00001eb035270 Zea mays HOM05D008002 ORTHO05D010148 1.1e-25 120.9 165 42.4
HanXRQChr15g0479771 Helianthus annuus HOM05D008002 ORTHO05D010148 1.4e-25 120.6 106 55.7
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.4e-25 118.6 97 59.8
PSO675G9248 Papaver somniferum HOM05D008002 ORTHO05D010148 5.4e-25 118.6 120 53.3
CDE10G0514 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 1.3e-23 114.0 164 44.5
HPP92_007470 Vanilla planifolia HOM05D008002 ORTHO05D010148 6.6e-23 111.7 172 40.7
ATR0763G180 Amborella trichopoda HOM05D008002 ORTHO05D010148 1.9e-22 110.2 106 53.8
AL7G10120 Arabidopsis lyrata HOM05D008002 ORTHO05D010148 2.5e-22 109.8 121 47.1
Os08g0512100 Oryza sativa ssp. japonica HOM05D008002 ORTHO05D010148 5.6e-22 108.6 177 38.4
TAR628G1479 Trochodendron aralioides HOM05D008002 ORTHO05D010148 9.6e-22 107.8 88 61.4
MBI01_g17256_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.6e-21 107.1 88 64.8
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 9.0e-20 101.3 88 58.0
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 2.6e-19 99.8 86 58.1
CARHR293990 Cardamine hirsuta HOM05D008002 ORTHO05D010148 1.3e-18 97.4 152 40.1
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 6.4e-18 95.1 76 61.8
CDE10G0941 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 1.3e-15 87.4 89 53.9
Gohir.A13G064166 Gossypium hirsutum HOM05D008002 ORTHO05D010148 6.9e-12 75.1 84 53.6
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 2.7e-08 63.2 70 48.6


User provided reference genes

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