Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.2e-91 339.7 165 100.0
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 7.5e-89 330.5 165 97.6
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.1e-67 259.2 162 79.6
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.5e-65 253.1 159 79.9
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.3e-64 250.0 165 73.3
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 8.6e-61 237.3 157 73.2
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 4.3e-60 235.0 157 72.6
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.0e-58 228.4 159 72.3
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.2e-57 226.9 159 71.7
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.7e-56 221.9 159 68.6
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 6.4e-56 221.1 159 68.6
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 6.4e-56 221.1 159 69.2
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.9e-55 219.5 157 66.9
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 7.0e-55 217.6 156 69.2
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 9.2e-55 217.2 162 67.9
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.8e-54 214.2 159 66.7
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.0e-53 213.8 159 67.9
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.1e-52 210.3 154 66.2
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.1e-52 210.3 156 69.2
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.3e-52 208.8 155 65.2
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 3.3e-52 208.8 161 67.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 9.5e-52 207.2 164 65.9
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 6.2e-51 204.5 155 64.5
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 3.1e-50 202.2 155 63.9
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 6.8e-50 201.1 161 66.5
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 6.8e-50 201.1 154 65.6
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 8.9e-50 200.7 159 65.4
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 8.9e-50 200.7 137 71.5
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.2e-49 200.3 161 60.2
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 1.5e-49 199.9 163 60.7
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.5e-49 199.9 162 64.8
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 2.0e-49 199.5 135 73.3
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.6e-49 199.1 135 71.1
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.4e-49 198.7 145 66.9
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.4e-49 198.7 145 66.9
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 9.8e-49 197.2 157 65.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.3e-48 196.8 163 63.8
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.7e-48 196.4 160 66.2
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.7e-48 196.4 162 64.2
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 2.2e-48 196.1 134 72.4
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 2.9e-48 195.7 143 69.9
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.9e-48 195.7 160 64.4
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 4.9e-48 194.9 156 65.4
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.9e-48 194.9 130 76.9
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 2.4e-47 192.6 155 62.6
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 4.1e-47 191.8 139 69.8
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.2e-46 190.3 144 67.4
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 2.7e-46 189.1 143 63.6
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.3e-45 186.8 160 55.0
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.3e-45 186.8 160 62.5
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.5e-44 183.3 155 62.6
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 7.3e-44 181.0 147 59.9
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 3.6e-43 178.7 131 69.5
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 4.0e-42 175.3 175 56.0
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 5.2e-42 174.9 154 57.8
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.0e-41 172.9 181 54.7
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 3.4e-41 172.2 146 60.3
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.3e-40 170.2 161 52.2
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.2e-40 169.5 152 55.9
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 8.4e-40 167.5 162 56.8
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.1e-39 167.2 164 52.4
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 2.4e-39 166.0 173 60.1
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 3.2e-39 165.6 158 54.4
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.0e-37 159.1 98 78.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 3.9e-37 158.7 150 54.7
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 5.1e-37 158.3 130 60.8
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.6e-37 157.9 150 59.3
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 6.6e-37 157.9 138 61.6
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 8.6e-37 157.5 178 49.4
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.1e-36 157.1 178 49.4
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.9e-36 156.4 156 57.7
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 7.3e-36 154.5 89 73.0
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 7.3e-36 154.5 154 55.2
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.2e-35 153.7 158 51.3
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.6e-35 153.3 158 51.3
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 2.4e-34 149.4 128 58.6
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 5.2e-34 148.3 131 60.3
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 8.9e-34 147.5 137 56.9
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 2.0e-33 146.4 144 56.2
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 3.4e-33 145.6 152 53.9
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 4.4e-33 145.2 185 42.7
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 5.8e-33 144.8 140 55.7
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 7.6e-33 144.4 137 54.0
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 1.1e-31 140.6 128 56.2
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.4e-31 140.2 126 57.9
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 2.4e-31 139.4 152 53.3
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 4.2e-31 138.7 143 53.1
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 4.2e-31 138.7 149 51.7
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.2e-31 138.7 150 54.7
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 7.1e-31 137.9 129 59.7
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 9.3e-31 137.5 156 48.1
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.6e-30 136.7 136 55.9
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 7.8e-30 134.4 127 57.5
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.0e-29 134.0 127 56.7
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.0e-29 134.0 127 56.7
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 3.0e-29 132.5 129 55.8
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.9e-29 132.1 118 61.0
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 6.6e-29 131.3 129 56.6
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 6.6e-29 131.3 129 56.6
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.6e-29 131.3 147 54.4
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.5e-28 130.2 132 52.3
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.5e-28 130.2 132 52.3
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.5e-28 130.2 127 55.9
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 2.5e-28 129.4 124 54.8
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 3.3e-28 129.0 124 58.1
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 7.3e-28 127.9 128 50.0
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 9.6e-28 127.5 130 55.4
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 8.1e-27 124.4 147 42.9
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.4e-26 122.9 82 69.5
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 3.1e-26 122.5 114 59.6
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 6.9e-26 121.3 148 48.0
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 4.5e-25 118.6 83 60.2
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 9.9e-25 117.5 122 57.4
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.8e-24 115.5 158 42.4
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 6.4e-24 114.8 164 42.1
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.6e-22 110.2 115 52.2
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 3.5e-22 109.0 69 68.1
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 5.1e-21 105.1 103 54.4
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 8.7e-21 104.4 140 47.1
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 2.5e-20 102.8 146 43.2
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 4.3e-20 102.1 117 52.1
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 7.4e-20 101.3 117 52.1
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 9.6e-20 100.9 128 47.7
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 1.6e-19 100.1 134 45.5
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 2.1e-19 99.8 117 51.3
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 2.1e-19 99.8 117 51.3
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 2.1e-19 99.8 117 51.3
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.6e-19 99.0 126 46.8
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 4.8e-19 98.6 125 46.4
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.4e-18 97.1 140 40.0
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.8e-18 96.7 114 50.0
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 6.9e-18 94.7 134 44.0
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.8e-16 89.0 124 45.2
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 6.4e-16 88.2 124 43.5
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.5e-15 85.1 65 61.5
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 9.3e-15 84.3 163 34.4
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 1.2e-14 84.0 83 57.8
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 1.6e-14 83.6 53 64.2
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.5e-12 76.3 134 42.5
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 2.4e-10 69.7 65 55.4
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 3.1e-10 69.3 63 55.6
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.6e-09 66.2 106 38.7
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 4.5e-09 65.5 80 40.0
Zm00001eb199930 Zea mays HOM05D005114 ORTHO05D006301 2.2e-08 63.2 162 29.6
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.1e-07 60.8 81 38.3
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.1e-07 60.8 94 36.2


User provided reference genes

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