Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.5e-195 686.0 365 100.0
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.8e-172 609.4 365 88.5
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.9e-169 599.4 357 87.7
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.4e-156 555.8 367 81.5
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 3.2e-148 528.9 365 78.6
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 4.6e-147 525.0 364 77.5
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 5.0e-146 521.5 364 76.6
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 8.6e-146 520.8 367 77.4
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.9e-145 519.6 363 77.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.5e-145 519.2 363 78.2
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 4.3e-145 518.5 363 77.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 4.3e-145 518.5 364 77.5
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.1e-144 516.2 364 77.7
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 3.6e-144 515.4 363 75.2
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 4.7e-144 515.0 365 76.7
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 6.2e-144 514.6 363 76.6
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.1e-143 513.8 364 77.2
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.1e-143 513.8 367 76.6
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 8.9e-143 510.8 369 75.9
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 4.4e-142 508.4 371 76.5
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 5.8e-142 508.1 361 76.5
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.7e-141 506.5 378 74.6
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.2e-141 506.1 371 73.0
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.7e-141 505.4 368 76.4
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.4e-141 504.6 371 76.0
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 4.1e-140 501.9 346 78.3
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 9.2e-140 500.7 339 79.9
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.2e-139 500.4 368 75.8
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.5e-139 498.8 348 77.9
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.8e-139 497.7 366 75.4
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.0e-138 497.3 361 73.1
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 3.0e-138 495.7 351 77.8
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 4.3e-137 491.9 358 75.7
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 9.5e-137 490.7 369 74.5
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.2e-136 490.3 366 71.9
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.6e-136 490.0 355 73.5
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.1e-136 489.6 370 72.7
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.1e-136 489.6 354 76.3
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.8e-136 489.2 367 74.1
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 6.2e-136 488.0 374 73.0
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.8e-135 486.5 365 71.8
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.8e-135 486.5 323 79.9
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.8e-135 486.5 339 77.0
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.8e-135 486.5 343 76.4
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.3e-135 486.1 367 73.8
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.2e-134 483.8 326 78.5
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 1.5e-134 483.4 367 73.8
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.6e-134 482.6 337 77.7
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.4e-134 482.3 366 73.8
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.4e-134 482.3 365 71.5
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 4.4e-134 481.9 348 76.4
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.3e-133 480.3 366 74.0
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.7e-133 479.9 369 71.8
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.7e-133 479.9 336 78.9
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.7e-133 479.9 339 76.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.7e-133 479.9 323 78.9
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-133 479.6 366 73.8
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 2.2e-133 479.6 366 73.8
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 2.2e-133 479.6 368 73.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 2.9e-133 479.2 367 72.8
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 4.9e-133 478.4 369 70.2
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 4.9e-133 478.4 368 72.6
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 4.9e-133 478.4 368 71.7
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 6.4e-133 478.0 363 72.5
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 6.4e-133 478.0 366 73.5
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 8.3e-133 477.6 321 79.4
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-132 477.2 336 78.3
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.4e-132 476.9 323 78.3
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 1.9e-132 476.5 366 73.2
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 1.9e-132 476.5 366 73.2
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.4e-132 476.1 377 71.9
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 3.2e-132 475.7 370 69.7
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 5.4e-132 474.9 348 74.1
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 7.1e-132 474.6 366 73.0
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 7.1e-132 474.6 366 73.0
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 7.1e-132 474.6 366 73.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 9.2e-132 474.2 336 78.3
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-131 473.8 366 73.0
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-131 473.4 366 72.7
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.1e-131 473.0 366 72.7
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.1e-131 473.0 355 72.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-131 472.6 366 73.2
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 6.0e-131 471.5 328 78.4
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 7.8e-131 471.1 367 70.8
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-130 470.3 366 72.7
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 2.3e-130 469.5 374 69.3
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.3e-130 469.5 375 69.3
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.0e-130 469.2 375 69.3
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 5.1e-130 468.4 356 72.8
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 5.1e-130 468.4 375 69.1
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 6.6e-130 468.0 365 71.5
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.6e-128 463.4 366 68.0
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.1e-128 463.0 366 68.0
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 4.7e-128 461.8 353 72.0
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-127 460.7 339 68.4
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.4e-127 459.5 322 76.4
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 2.0e-126 456.4 354 72.0
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 3.4e-126 455.7 328 74.4
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 3.4e-126 455.7 362 69.1
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 3.4e-126 455.7 360 69.7
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 4.4e-126 455.3 366 68.9
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 7.6e-126 454.5 362 68.8
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.9e-125 452.6 325 75.7
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 3.8e-125 452.2 360 69.2
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.9e-124 449.9 370 67.3
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.4e-124 449.5 369 68.0
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.7e-122 443.4 334 74.0
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 4.8e-120 435.3 352 68.5
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 3.1e-119 432.6 365 66.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.2e-118 430.6 365 66.0
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.5e-118 430.3 365 66.0
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.8e-117 425.6 367 65.9
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.1e-116 424.1 364 66.2
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.9e-116 423.3 367 62.1
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.4e-116 422.9 323 69.7
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 9.6e-113 411.0 345 65.8
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.2e-110 404.1 365 63.6
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.6e-107 393.7 367 64.0
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-107 392.1 311 72.3
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 2.6e-102 376.3 296 72.6
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 1.3e-101 374.0 332 63.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 8.4e-101 371.3 327 61.8
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 3.2e-100 369.4 355 58.0
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.8e-95 353.6 288 70.8
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 4.5e-94 349.0 350 58.6
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 7.6e-94 348.2 242 78.1
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.5e-92 343.2 201 82.6
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 3.2e-92 342.8 242 77.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.9e-89 333.6 367 53.7
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.8e-85 319.3 297 57.6
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.1e-84 317.8 312 57.1
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.0e-81 307.0 348 52.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.3e-80 304.3 355 53.5
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.4e-78 296.2 322 55.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.5e-69 265.4 232 60.3
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.1e-60 238.0 209 62.2
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.6e-51 207.6 229 52.8
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 1.0e-45 188.3 126 78.6
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.2e-41 174.9 162 56.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.5e-41 174.5 144 64.6
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.2e-38 164.9 164 57.3
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 5.9e-38 162.5 102 77.5
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.5e-33 147.9 90 76.7
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 5.8e-33 146.0 95 75.8
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 6.6e-29 132.5 126 57.9
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.5e-28 131.3 128 57.0
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 7.3e-28 129.0 91 69.2
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-25 121.3 78 78.2
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.0e-25 120.9 136 53.7
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 2.2e-24 117.5 79 69.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 7.1e-23 112.5 283 32.2
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-21 108.2 128 49.2
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 4.7e-19 99.8 65 75.4
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 1.7e-16 91.3 84 57.1
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 9.2e-15 85.5 272 32.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 4.6e-14 83.2 162 37.7
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 2.3e-13 80.9 139 42.4
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.6e-11 73.6 76 55.3
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.6e-11 73.6 76 55.3
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.1e-11 72.4 51 68.6
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-10 70.9 49 73.5
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 5.2e-10 69.7 62 62.9
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-09 68.6 46 73.9
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.6e-09 67.4 53 64.2
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.4e-09 66.6 46 73.9
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 5.8e-09 66.2 55 58.2
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.9e-08 63.9 60 58.3
TAR625G0182 Trochodendron aralioides HOM05D000369 ORTHO05D000253 8.4e-08 62.4 82 48.8
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-07 61.6 46 67.4
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-07 61.6 49 55.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.9e-07 61.2 67 47.8
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 5.4e-07 59.7 64 50.0
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 9.3e-07 58.9 68 69.1
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-06 58.5 68 47.1
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 7.8e-06 55.8 43 60.5


User provided reference genes

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