Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 0.0e+00 1150.6 612 100.0
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 8.9e-305 1049.7 649 88.3
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 4.9e-271 937.6 616 82.0
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 4.5e-256 887.9 621 76.3
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.3e-234 816.6 623 70.5
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.3e-234 816.6 622 70.9
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 6.3e-234 814.3 628 69.7
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.4e-233 813.1 610 70.7
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.1e-233 810.4 628 69.7
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 3.8e-231 805.1 621 69.1
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 9.4e-230 800.4 600 70.7
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.8e-228 796.2 599 70.3
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 6.8e-228 794.3 622 68.3
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 8.8e-228 793.9 623 68.5
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.8e-225 786.2 621 67.8
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 7.0e-225 784.3 620 67.7
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 9.1e-225 783.9 622 67.4
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 3.5e-224 781.9 610 69.7
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 8.5e-223 777.3 607 68.2
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.9e-222 776.2 591 69.0
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.9e-222 776.2 616 67.5
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 9.5e-222 773.9 604 68.4
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.0e-220 770.4 607 68.0
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 5.2e-220 768.1 607 67.9
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 4.4e-219 765.0 603 67.0
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.7e-218 763.1 594 69.2
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.7e-218 763.1 589 68.3
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.4e-217 760.0 620 65.3
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.2e-216 756.9 626 65.8
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 2.7e-216 755.7 602 68.1
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 3.5e-216 755.4 578 68.9
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.7e-215 753.1 608 65.8
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.0e-215 751.5 661 63.7
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 5.0e-215 751.5 650 62.6
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 6.6e-215 751.1 601 67.6
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 3.6e-213 745.3 617 65.8
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 4.7e-213 745.0 593 66.1
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 5.7e-211 738.0 616 64.9
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 7.5e-211 737.6 611 64.0
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.1e-209 733.8 621 65.2
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.1e-209 733.8 629 64.7
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 3.2e-209 732.3 590 66.6
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 3.5e-208 728.8 616 64.8
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 5.9e-208 728.0 598 67.6
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.0e-207 727.2 611 64.6
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.8e-205 719.2 604 63.4
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 3.6e-205 718.8 597 64.2
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 6.2e-205 718.0 617 63.9
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 3.4e-203 712.2 588 65.1
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.2e-200 703.7 593 63.7
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.2e-200 703.7 617 62.7
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 3.5e-200 702.2 589 62.6
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 6.0e-200 701.4 607 63.8
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.1e-198 697.2 640 59.1
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 5.2e-196 688.3 596 62.4
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 6.8e-196 688.0 599 62.6
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.3e-194 683.7 592 62.7
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.9e-193 679.9 598 60.9
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 2.4e-193 679.5 599 63.4
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 5.4e-193 678.3 576 63.2
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.1e-192 676.4 628 61.0
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.0e-192 674.9 625 61.6
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.0e-191 674.1 626 60.7
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.0e-191 674.1 597 61.0
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 3.0e-191 672.5 630 60.2
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 3.0e-191 672.5 605 60.7
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.9e-191 672.2 601 62.2
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.9e-191 672.2 601 62.2
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 8.6e-191 671.0 603 62.4
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.9e-190 669.8 603 62.2
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.9e-190 669.8 584 61.6
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.9e-190 669.8 590 61.7
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 4.3e-190 668.7 599 60.9
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.2e-189 667.2 575 63.1
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.6e-189 665.6 610 60.7
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 4.7e-189 665.2 602 61.3
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 3.1e-188 662.5 604 59.9
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 8.9e-188 661.0 619 62.2
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.2e-187 660.6 623 60.2
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 6.4e-186 654.8 584 61.5
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 8.4e-186 654.4 609 60.3
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 4.1e-185 652.1 617 59.6
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 4.1e-185 652.1 617 59.6
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 5.4e-185 651.7 603 62.2
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.2e-184 650.6 612 56.9
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.3e-183 647.1 608 61.2
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 5.1e-183 645.2 583 60.4
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 5.1e-183 645.2 604 59.8
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 4.3e-182 642.1 605 59.7
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.2e-181 640.6 622 59.6
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.2e-181 640.6 597 60.0
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.6e-181 640.2 598 59.2
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 2.1e-181 639.8 591 59.1
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 5.2e-180 635.2 629 58.2
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 3.8e-178 629.0 504 67.9
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 6.6e-175 618.2 601 57.2
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 2.8e-173 612.8 601 57.1
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.9e-170 602.1 617 57.7
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 7.1e-169 598.2 591 56.5
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 7.9e-168 594.7 611 55.2
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.6e-165 587.0 559 58.1
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 4.8e-165 585.5 621 55.4
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 5.8e-163 578.6 610 54.4
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 3.0e-159 566.2 609 55.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 8.7e-159 564.7 592 56.8
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 5.3e-156 555.4 560 58.8
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.1e-152 543.5 591 55.5
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.7e-146 523.9 471 61.6
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.9e-142 510.4 470 63.0
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 6.1e-136 488.8 583 47.2
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.4e-127 461.1 593 48.4
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.8e-117 426.8 618 42.7
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 8.2e-117 425.2 620 42.7
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 6.1e-104 382.5 418 54.1
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 5.7e-102 375.9 382 57.9
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 6.3e-101 372.5 481 52.2
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 8.3e-93 345.5 258 67.4
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.7e-90 337.8 539 39.7
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.1e-79 302.0 342 51.5
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.0e-78 297.7 345 50.4
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 2.5e-73 280.8 371 45.0
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.5e-73 280.8 296 54.7
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 6.2e-64 249.6 235 59.1
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 4.2e-60 236.9 254 54.3
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 5.4e-60 236.5 309 41.7
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.2e-59 235.3 220 60.0
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 2.1e-59 234.6 294 45.6
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 7.8e-59 232.6 206 59.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 2.1e-51 208.0 119 86.6
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 5.6e-49 199.9 121 75.2
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.9e-44 184.9 194 49.5
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.6e-43 181.8 222 43.2
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.3e-40 172.2 157 59.9
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 8.2e-40 169.5 125 70.4
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.1e-39 167.5 159 57.9
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.6e-38 164.5 227 45.8
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.1e-36 156.4 152 57.2
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 9.3e-36 156.0 160 53.1
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 2.1e-35 154.8 100 76.0
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 6.7e-34 149.8 113 72.6
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.5e-33 148.7 529 27.0
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.5e-33 148.7 131 56.5
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.5e-33 147.9 118 60.2
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 8.2e-32 142.9 187 50.3
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 9.0e-31 139.4 124 67.7
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.8e-29 134.0 286 33.6
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 2.5e-25 121.3 87 71.3
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 5.7e-25 120.2 87 71.3
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 6.3e-24 116.7 65 84.6
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.8e-23 115.2 111 50.5
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 3.8e-21 107.5 148 40.5
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 6.5e-21 106.7 109 48.6
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.2e-20 104.4 70 71.4
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 4.2e-20 104.0 74 73.0
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 3.9e-18 97.4 175 45.1
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 3.3e-17 94.4 79 64.6
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 2.2e-16 91.7 141 43.3
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 6.3e-16 90.1 73 69.9
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-15 89.0 72 68.1
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.4e-15 89.0 178 32.6
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 6.5e-13 80.1 49 77.6
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 2.1e-11 75.1 48 75.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.8e-10 72.0 72 55.6
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 5.2e-10 70.5 76 56.6
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 6.7e-10 70.1 135 36.3
Mapoly0118s0038 Marchantia polymorpha HOM05D004142 ORTHO05D254901 3.1e-07 61.2 214 24.8


User provided reference genes

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