Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.8e-257 891.0 442 100.0
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 7.3e-216 753.8 445 84.0
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.2e-207 726.5 439 80.6
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 8.1e-207 723.8 442 79.9
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.0e-206 721.5 444 78.8
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 7.6e-205 717.2 442 79.2
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 3.2e-203 711.8 445 78.9
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 4.2e-203 711.4 445 77.3
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 5.4e-203 711.1 441 79.1
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.2e-202 709.9 445 77.8
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 1.2e-202 709.9 445 78.0
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 1.0e-201 706.8 474 74.5
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.3e-201 706.4 444 78.4
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 2.3e-201 705.7 442 77.8
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 3.9e-201 704.9 441 77.8
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 3.9e-201 704.9 436 77.8
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 5.1e-201 704.5 450 76.0
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 8.7e-201 703.7 445 77.5
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 1.5e-200 703.0 444 76.6
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.5e-200 703.0 445 77.5
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 3.3e-200 701.8 441 77.8
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 7.3e-200 700.7 443 77.7
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 9.6e-200 700.3 446 76.5
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.3e-199 699.9 442 77.6
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.6e-199 699.5 442 78.1
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.8e-199 698.7 445 76.9
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 2.8e-199 698.7 442 76.9
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.4e-198 696.4 441 76.2
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 2.4e-198 695.7 442 77.6
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.2e-197 693.3 447 75.8
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 2.0e-197 692.6 442 76.7
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.6e-197 692.2 445 75.7
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 7.6e-197 690.6 442 76.5
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 2.2e-196 689.1 441 75.1
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 2.4e-195 685.6 442 75.6
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.2e-195 685.3 445 75.7
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 4.2e-195 684.9 445 76.0
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 2.1e-194 682.6 437 77.3
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 3.9e-193 678.3 445 75.1
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.9e-193 678.3 440 76.6
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 3.9e-193 678.3 445 74.2
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 5.1e-193 677.9 445 73.9
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.5e-192 676.4 447 72.9
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.5e-192 675.6 463 72.1
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 9.6e-192 673.7 434 76.0
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 8.1e-191 670.6 445 72.8
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 5.3e-190 667.9 416 78.6
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 6.9e-190 667.5 441 75.1
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 3.4e-189 665.2 441 72.6
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 4.5e-189 664.8 441 72.3
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.3e-188 663.3 440 75.0
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.3e-188 663.3 440 74.5
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 3.8e-188 661.8 439 71.3
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.4e-187 659.8 443 72.5
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.4e-187 659.8 435 74.5
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 2.5e-187 659.1 446 71.7
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 3.2e-187 658.7 462 69.7
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.2e-186 656.8 445 72.1
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 3.5e-186 655.2 439 72.2
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 6.0e-186 654.4 465 73.1
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.3e-185 653.3 440 71.6
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.8e-185 652.9 433 73.7
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.8e-185 652.9 434 74.7
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 3.9e-185 651.7 353 90.4
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 5.6e-184 647.9 447 70.5
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 1.6e-183 646.4 446 70.6
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.1e-183 646.0 438 70.8
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.1e-183 646.0 405 76.8
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 7.6e-181 637.5 451 69.4
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 2.8e-175 619.0 442 69.0
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 5.3e-174 614.8 419 73.0
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.1e-170 602.8 444 69.4
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 3.3e-168 595.5 416 70.9
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 1.3e-167 593.6 361 77.6
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 2.8e-167 592.4 444 67.6
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.1e-166 590.5 439 67.4
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 6.9e-166 587.8 411 68.9
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.2e-165 587.0 340 86.8
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 7.9e-162 574.3 435 64.6
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.8e-161 573.2 347 79.3
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 6.7e-161 571.2 387 71.8
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 6.7e-161 571.2 387 72.1
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 2.5e-155 552.7 383 71.0
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.2e-154 550.4 656 48.3
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 4.7e-154 548.5 351 74.6
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 2.2e-151 539.7 441 64.9
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.0e-140 504.2 443 60.0
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 1.5e-139 500.4 496 56.2
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 3.6e-138 495.7 389 64.5
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 6.1e-138 495.0 289 86.2
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 6.1e-138 495.0 423 61.5
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 3.0e-137 492.7 429 56.4
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 4.1e-134 482.3 442 58.4
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 7.7e-133 478.0 441 56.7
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 7.2e-131 471.5 286 79.4
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 2.1e-130 469.9 431 56.6
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 4.7e-130 468.8 286 80.1
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 3.0e-129 466.1 440 56.8
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.0e-124 451.1 442 56.1
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 5.0e-124 448.7 286 76.6
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 6.6e-124 448.4 280 77.5
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 1.2e-122 444.1 390 62.1
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 4.0e-121 439.1 439 54.7
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.2e-119 433.3 372 57.5
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 5.2e-113 412.1 290 69.7
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.9e-110 403.7 438 52.5
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 3.9e-108 396.0 442 52.5
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 6.2e-106 388.7 404 53.5
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 2.6e-104 383.3 450 45.1
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 4.9e-103 379.0 288 64.2
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 7.8e-101 371.7 442 48.2
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 4.7e-98 362.5 214 79.0
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 2.4e-97 360.1 214 77.6
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.6e-96 356.7 416 50.0
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 4.0e-81 306.2 342 47.1
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.4e-70 271.2 170 76.5
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.4e-70 271.2 170 76.5
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.5e-69 266.5 152 82.9
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 6.0e-69 265.8 161 77.6
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 1.5e-64 251.1 184 65.2
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.5e-64 251.1 150 76.0
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.3e-55 221.5 126 82.5
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.8e-50 203.0 130 73.8
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 8.2e-50 202.2 127 72.4
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 5.3e-49 199.5 127 71.7
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 5.5e-46 189.5 131 71.0
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 3.0e-44 183.7 123 68.3
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.5e-43 181.4 95 90.5
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 3.5e-40 170.2 174 52.9
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 1.1e-38 165.2 274 35.8
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.1e-33 147.1 112 67.0
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 4.1e-33 146.7 105 69.5
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 5.9e-32 142.9 104 65.4
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.9e-31 140.6 81 79.0
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 1.4e-25 121.7 108 54.6
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.2e-16 92.0 69 69.6
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.3e-15 87.8 77 55.8
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 6.6e-15 86.3 63 73.0
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 8.6e-15 85.9 63 73.0
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.6e-13 80.5 45 80.0
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 3.6e-13 80.5 48 70.8


User provided reference genes

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