Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.4e-41 171.8 91 100.0
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.2e-19 99.8 71 59.2
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 5.9e-19 97.4 69 60.9
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 5.9e-19 97.4 69 60.9
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 5.9e-19 97.4 69 60.9
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 2.2e-18 95.5 68 60.3
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 6.5e-18 94.0 71 57.7
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 1.1e-17 93.2 73 58.9
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.4e-17 92.8 60 65.0
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 7.2e-17 90.5 65 60.0
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 3.6e-16 88.2 68 55.9
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 4.6e-16 87.8 67 59.7
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 4.6e-16 87.8 72 58.3
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 7.9e-16 87.0 71 57.7
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 7.9e-16 87.0 71 56.3
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.0e-15 86.7 64 59.4
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 1.0e-15 86.7 69 59.4
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 1.4e-15 86.3 73 54.8
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.8e-15 85.9 69 55.1
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 3.0e-15 85.1 67 53.7
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 5.1e-15 84.3 71 49.3
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 5.1e-15 84.3 71 49.3
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 5.1e-15 84.3 71 49.3
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 6.7e-15 84.0 61 60.7
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 6.7e-15 84.0 64 57.8
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 8.8e-15 83.6 73 56.2
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 8.8e-15 83.6 65 60.0
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 8.8e-15 83.6 66 56.1
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.1e-14 83.2 66 59.1
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 1.1e-14 83.2 71 56.3
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 1.1e-14 83.2 76 52.6
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 1.5e-14 82.8 71 47.9
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 1.5e-14 82.8 71 47.9
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 1.5e-14 82.8 59 59.3
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.9e-14 82.4 61 57.4
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 2.5e-14 82.0 60 55.0
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 2.5e-14 82.0 67 52.2
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 3.3e-14 81.6 74 51.4
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 3.3e-14 81.6 65 56.9
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 3.3e-14 81.6 60 56.7
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 4.3e-14 81.3 68 51.5
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 4.3e-14 81.3 67 58.2
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 5.7e-14 80.9 60 55.0
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 5.7e-14 80.9 68 57.4
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 7.4e-14 80.5 59 61.0
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 9.7e-14 80.1 69 52.2
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 9.7e-14 80.1 57 64.9
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 9.7e-14 80.1 57 64.9
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 9.7e-14 80.1 57 64.9
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.3e-13 79.7 60 55.0
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.3e-13 79.7 71 53.5
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.3e-13 79.7 71 53.5
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 1.3e-13 79.7 63 57.1
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 1.7e-13 79.3 49 63.3
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 2.2e-13 79.0 60 56.7
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 2.2e-13 79.0 68 57.4
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 2.8e-13 78.6 66 54.5
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 3.7e-13 78.2 61 60.7
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 3.7e-13 78.2 60 53.3
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 4.8e-13 77.8 70 54.3
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 6.3e-13 77.4 65 55.4
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 2.4e-12 75.5 60 56.7
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 2.4e-12 75.5 63 55.6
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 3.1e-12 75.1 68 48.5
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 4.1e-12 74.7 59 55.9
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 6.9e-12 73.9 67 50.7
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 9.1e-12 73.6 67 52.2
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 1.2e-11 73.2 56 64.3
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.5e-11 72.8 66 54.5
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 2.6e-11 72.0 75 53.3
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 4.5e-11 71.2 48 62.5
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 4.5e-11 71.2 86 40.7
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 7.7e-11 70.5 51 58.8
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 1.0e-10 70.1 67 49.3
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 6.5e-10 67.4 70 48.6
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 6.5e-10 67.4 70 48.6
Lj1g0027614 Lotus japonicus HOM05D030083 ORTHO05D009577 1.9e-09 65.9 50 60.0
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 2.5e-09 65.5 53 50.9
Eucgr.G00244 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.5e-09 65.5 59 50.8
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 2.5e-09 65.5 59 52.5
Eucgr.G00245 Eucalyptus grandis HOM05D007709 ORTHO05D009577 9.4e-09 63.5 57 50.9
Glyma.08G346600 Glycine max HOM05D030083 ORTHO05D009577 3.6e-08 61.6 49 61.2
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 6.1e-08 60.8 46 56.5
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 7.9e-08 60.5 53 54.7
Phvul.008G133200 Phaseolus vulgaris HOM05D030083 ORTHO05D009577 2.3e-07 58.9 48 56.2
Phvul.008G133400 Phaseolus vulgaris HOM05D030083 ORTHO05D009577 2.3e-07 58.9 48 56.2
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 3.0e-07 58.5 65 46.2
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 1.1e-06 56.6 57 50.9
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.5e-06 56.2 65 44.6
Medtr7g053460 Medicago truncatula HOM05D007709 ORTHO05D009577 7.4e-06 53.9 62 48.4
SMO358G0048 Selaginella moellendorffii HOM05D007709 ORTHO05D009577 7.4e-06 53.9 57 49.1


User provided reference genes

Program Settings