Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 4.1e-38 161.0 87 100.0
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 2.5e-35 151.8 88 81.8
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 5.2e-25 117.5 76 71.1
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 1.2e-24 116.3 63 84.1
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 4.9e-23 110.9 71 69.0
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 4.9e-23 110.9 71 69.0
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 9.5e-19 96.7 69 63.8
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 4.7e-18 94.4 69 65.2
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 1.4e-17 92.8 71 59.2
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.8e-17 92.4 71 57.7
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 4.0e-17 91.3 65 60.0
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 6.8e-17 90.5 68 57.4
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 6.8e-17 90.5 68 57.4
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 6.8e-17 90.5 68 57.4
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 1.5e-16 89.4 65 56.9
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 2.6e-16 88.6 67 56.7
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 2.6e-16 88.6 65 60.0
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 3.4e-16 88.2 65 60.0
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 3.4e-16 88.2 65 60.0
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 5.8e-16 87.4 86 61.6
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 9.9e-16 86.7 72 56.9
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 1.3e-15 86.3 67 58.2
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 1.7e-15 85.9 70 60.0
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-15 85.9 61 59.0
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.9e-15 85.1 61 63.9
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 4.9e-15 84.3 64 59.4
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 6.4e-15 84.0 70 48.6
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 1.4e-14 82.8 68 52.9
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 1.4e-14 82.8 68 52.9
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 1.4e-14 82.8 68 52.9
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 1.4e-14 82.8 65 55.4
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 1.9e-14 82.4 64 57.8
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.9e-14 82.4 70 50.0
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 1.9e-14 82.4 68 51.5
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 2.4e-14 82.0 66 59.1
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 3.2e-14 81.6 70 52.9
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 4.2e-14 81.3 70 54.3
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 4.2e-14 81.3 65 56.9
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 9.2e-14 80.1 67 61.2
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 1.2e-13 79.7 68 51.5
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 1.2e-13 79.7 68 51.5
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.7e-13 78.6 68 52.9
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 2.7e-13 78.6 67 53.7
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 2.7e-13 78.6 68 55.9
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 2.7e-13 78.6 71 50.7
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 4.6e-13 77.8 82 59.8
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 6.0e-13 77.4 63 52.4
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 6.0e-13 77.4 53 58.5
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.0e-12 76.6 68 54.4
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 1.7e-12 75.9 65 50.8
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.7e-12 75.9 63 55.6
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 2.3e-12 75.5 66 51.5
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 2.3e-12 75.5 57 56.1
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 2.3e-12 75.5 57 52.6
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 2.3e-12 75.5 74 56.8
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 2.3e-12 75.5 70 51.4
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 3.9e-12 74.7 60 56.7
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 3.9e-12 74.7 85 47.1
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 6.6e-12 73.9 60 55.0
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 8.7e-12 73.6 51 60.8
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 8.7e-12 73.6 51 60.8
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 8.7e-12 73.6 51 60.8
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 8.7e-12 73.6 57 57.9
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 1.1e-11 73.2 68 52.9
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 1.1e-11 73.2 72 52.8
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 1.5e-11 72.8 69 53.6
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 1.9e-11 72.4 71 50.7
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 2.5e-11 72.0 72 50.0
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 2.8e-10 68.6 59 50.8
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 3.6e-10 68.2 68 48.5
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 2.4e-09 65.5 69 44.9
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 2.4e-09 65.5 69 44.9
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 2.4e-09 65.5 60 53.3
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 4.0e-09 64.7 60 51.7
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 6.9e-09 63.9 52 55.8
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 9.0e-09 63.5 70 47.1
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.2e-08 63.2 61 50.8
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 1.2e-08 63.2 60 48.3
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 2.0e-08 62.4 70 47.1
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 2.6e-08 62.0 54 46.3
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 3.4e-08 61.6 56 51.8
Eucgr.G00244 Eucalyptus grandis HOM05D007709 ORTHO05D009577 9.9e-08 60.1 57 47.4
Haze_10744 Corylus avellana HOM05D022555 ORTHO05D009577 1.3e-07 59.7 36 75.0
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.3e-07 59.7 52 53.8
Eucgr.G00245 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.9e-06 55.8 55 43.6
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 1.9e-06 55.8 62 46.8
Haze_21999 Corylus avellana HOM05D022555 ORTHO05D163883 4.2e-06 54.7 28 82.1


User provided reference genes

Program Settings