Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005355 Carpinus fangiana HOM05D000741 ORTHO05D126216 4.5e-49 197.6 99 100.0
Haze_02012 Corylus avellana HOM05D000741 ORTHO05D000506 1.7e-19 99.4 85 69.4
Haze_19775 Corylus avellana HOM05D000741 ORTHO05D000506 8.3e-19 97.1 85 65.9
Cfa016765 Carpinus fangiana HOM05D000741 ORTHO05D000506 1.6e-17 92.8 82 65.9
QL02p092026 Quercus lobata HOM05D000013 ORTHO05D000506 2.5e-15 85.5 60 75.0
QL02p091981 Quercus lobata HOM05D000013 ORTHO05D000506 2.3e-13 79.0 81 54.3
CiPaw.16G116100 Carya illinoinensis HOM05D000013 ORTHO05D000506 2.0e-12 75.9 71 59.2
CANSAT11G2579 Cannabis sativa HOM05D000741 ORTHO05D000506 1.3e-11 73.2 89 47.2
RcHm_v2.0_Chr2g0086191 Rosa chinensis HOM05D000741 ORTHO05D000506 1.4e-10 69.7 53 71.7
RcHm_v2.0_Chr6g0247981 Rosa chinensis HOM05D000013 ORTHO05D000506 1.9e-10 69.3 53 69.8
FvH4_1g01363 Fragaria vesca HOM05D000013 ORTHO05D000506 4.1e-10 68.2 53 69.8
FAN19G0376 Fragaria x ananassa HOM05D000013 ORTHO05D000506 4.1e-10 68.2 53 69.8
FAN19G1141 Fragaria x ananassa HOM05D000741 ORTHO05D000506 4.1e-10 68.2 53 69.8
FAN26G0945 Fragaria x ananassa HOM05D000741 ORTHO05D000506 7.1e-10 67.4 53 67.9
RcHm_v2.0_Chr2g0086211 Rosa chinensis HOM05D000013 ORTHO05D000506 1.2e-09 66.6 53 67.9
FvH4_1g01390 Fragaria vesca HOM05D000013 ORTHO05D000506 1.6e-09 66.2 53 67.9
FvH4_1g01420 Fragaria vesca HOM05D000013 ORTHO05D000506 1.6e-09 66.2 53 67.9
Ca_21599_v3 Cicer arietinum L. HOM05D000741 ORTHO05D000506 4.6e-09 64.7 63 54.0
FAN23G0618 Fragaria x ananassa HOM05D000741 ORTHO05D000506 4.6e-09 64.7 40 77.5
FAN28G1980 Fragaria x ananassa HOM05D000013 ORTHO05D000506 4.6e-09 64.7 53 66.0
Thecc.09G035600 Theobroma cacao HOM05D000741 ORTHO05D000506 4.6e-09 64.7 54 57.4
PGR142G0036 Punica granatum HOM05D000741 ORTHO05D000506 6.0e-09 64.3 85 44.7
FvH4_1g01350 Fragaria vesca HOM05D000741 ORTHO05D000506 7.8e-09 63.9 53 66.0
Duzib168G0055 Durio zibethinus HOM05D000013 ORTHO05D014604 2.3e-08 62.4 54 55.6
FvH4_1g01322 Fragaria vesca HOM05D000013 ORTHO05D000506 2.3e-08 62.4 53 64.2
Gohir.A13G185100 Gossypium hirsutum HOM05D000013 ORTHO05D000506 2.3e-08 62.4 63 50.8
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 3.9e-08 61.6 64 50.0
Ciclev10010726m.g Citrus clementina HOM05D000741 ORTHO05D000506 3.9e-08 61.6 53 52.8
Gohir.A13G185000 Gossypium hirsutum HOM05D000741 ORTHO05D000506 3.9e-08 61.6 53 58.5
Rhsim01G0039400 Rhododendron simsii HOM05D000741 ORTHO05D000506 3.9e-08 61.6 66 51.5
TWI34G0122 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 3.9e-08 61.6 74 47.3
TWI34G1137 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 3.9e-08 61.6 59 55.9
GSVIVG01007370001 Vitis vinifera HOM05D000013 ORTHO05D000506 3.9e-08 61.6 43 67.4
PGR142G2102 Punica granatum HOM05D000741 ORTHO05D000506 5.1e-08 61.2 40 70.0
Rhsim01G0039300 Rhododendron simsii HOM05D000741 ORTHO05D000506 5.1e-08 61.2 43 69.8
arahy.Tifrunner.gnm1.ann1.GV4WAN Arachis hypogaea HOM05D000013 ORTHO05D000506 6.6e-08 60.8 63 50.8
Eucgr.C00396 Eucalyptus grandis HOM05D000741 ORTHO05D000506 6.6e-08 60.8 40 67.5
FvH4_1g01365 Fragaria vesca HOM05D000013 ORTHO05D000506 6.6e-08 60.8 40 72.5
VMungo1215G1212 Vigna mungo HOM05D000741 ORTHO05D000506 6.6e-08 60.8 71 47.9
GSVIVG01007371001 Vitis vinifera HOM05D000741 ORTHO05D000506 6.6e-08 60.8 72 44.4
Medtr4g117040 Medicago truncatula HOM05D000741 ORTHO05D000506 8.6e-08 60.5 72 50.0
vmacro15533 Vaccinium macrocarpon HOM05D000741 ORTHO05D000506 8.6e-08 60.5 43 67.4
Eucgr.C00384 Eucalyptus grandis HOM05D000013 ORTHO05D000506 1.1e-07 60.1 51 58.8
Gohir.D13G191500 Gossypium hirsutum HOM05D000741 ORTHO05D000506 1.1e-07 60.1 53 56.6
Gorai.013G217500 Gossypium raimondii HOM05D000013 ORTHO05D000506 1.1e-07 60.1 53 56.6
Lalb_Chr07g0179651 Lupinus albus HOM05D000013 ORTHO05D000506 1.1e-07 60.1 72 47.2
Medtr4g117030 Medicago truncatula HOM05D000741 ORTHO05D000506 1.1e-07 60.1 71 46.5
Psat4g032080 Pisum sativum HOM05D000741 ORTHO05D000506 1.1e-07 60.1 72 45.8
TWI32G0881 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 1.1e-07 60.1 77 44.2
arahy.Tifrunner.gnm1.ann1.1D4BVZ Arachis hypogaea HOM05D000741 ORTHO05D000506 1.5e-07 59.7 64 48.4
Eucgr.C00389 Eucalyptus grandis HOM05D000741 ORTHO05D000506 1.5e-07 59.7 60 51.7
Medtr4g117020 Medicago truncatula HOM05D000741 ORTHO05D000506 1.5e-07 59.7 71 46.5
Medtr7g096730 Medicago truncatula HOM05D000741 ORTHO05D000506 1.5e-07 59.7 84 42.9
vmacro20148 Vaccinium macrocarpon HOM05D000741 ORTHO05D000506 1.9e-07 59.3 54 55.6
vmacro20151 Vaccinium macrocarpon HOM05D000741 ORTHO05D000506 1.9e-07 59.3 54 53.7
Eucgr.C00394 Eucalyptus grandis HOM05D000741 ORTHO05D000506 2.5e-07 58.9 60 50.0
Phvul.003G158700 Phaseolus vulgaris HOM05D000741 ORTHO05D000506 2.5e-07 58.9 80 42.5
Gorai.013G217600 Gossypium raimondii HOM05D000741 ORTHO05D000506 3.3e-07 58.5 57 52.6
Manes.14G144300 Manihot esculenta HOM05D000741 ORTHO05D000506 3.3e-07 58.5 39 69.2
GSVIVG01001061001 Vitis vinifera HOM05D000013 ORTHO05D000506 3.3e-07 58.5 38 71.1
Haze_18528 Corylus avellana HOM05D000741 ORTHO05D000506 4.3e-07 58.2 36 72.2
Haze_19283 Corylus avellana HOM05D000741 ORTHO05D000506 4.3e-07 58.2 36 72.2
Gohir.A13G185200 Gossypium hirsutum HOM05D000013 ORTHO05D000506 4.3e-07 58.2 46 58.7
Sabra18G0095200 Salix brachista HOM05D000741 ORTHO05D000506 4.3e-07 58.2 87 46.0
Migut.K00355 Erythranthe guttata HOM05D000741 ORTHO05D000506 5.6e-07 57.8 50 58.0
MD02G1011200 Malus domestica HOM05D000741 ORTHO05D000506 5.6e-07 57.8 40 67.5
Nn1g03793 Nelumbo nucifera HOM05D000013 ORTHO05D000011 5.6e-07 57.8 57 47.4
TWI32G1335 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 5.6e-07 57.8 53 56.6
vmacro21867 Vaccinium macrocarpon HOM05D000741 ORTHO05D000506 5.6e-07 57.8 54 51.9
Atru.chr2.535 Acer truncatum HOM05D000741 ORTHO05D000506 7.3e-07 57.4 39 64.1
Eucgr.C00399 Eucalyptus grandis HOM05D000741 ORTHO05D000506 7.3e-07 57.4 40 62.5
Eucgr.L01119 Eucalyptus grandis HOM05D000013 ORTHO05D000506 7.3e-07 57.4 41 63.4
Gohir.D13G191700 Gossypium hirsutum HOM05D000741 ORTHO05D000506 7.3e-07 57.4 57 52.6
RcHm_v2.0_Chr2g0160801 Rosa chinensis HOM05D000013 ORTHO05D000506 7.3e-07 57.4 38 68.4
Ciclev10007520m.g Citrus clementina HOM05D000741 ORTHO05D000506 9.5e-07 57.0 37 70.3
COL.COLO4_20112 Corchorus olitorius HOM05D000741 ORTHO05D000506 9.5e-07 57.0 59 50.8
RcHm_v2.0_Chr2g0086321 Rosa chinensis HOM05D000741 ORTHO05D000506 9.5e-07 57.0 77 44.2
Duzib168G0323 Durio zibethinus HOM05D000741 ORTHO05D000506 1.2e-06 56.6 54 53.7
MD02G1011400 Malus domestica HOM05D000741 ORTHO05D000506 1.2e-06 56.6 40 67.5
Psat4g032120 Pisum sativum HOM05D000741 ORTHO05D000506 1.2e-06 56.6 57 50.9
TWI34G1025 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 1.2e-06 56.6 37 70.3
Duzib150G1442 Durio zibethinus HOM05D000741 ORTHO05D000506 1.6e-06 56.2 62 51.6
Eucgr.C00386 Eucalyptus grandis HOM05D000741 ORTHO05D000506 1.6e-06 56.2 40 62.5
Eucgr.C00392 Eucalyptus grandis HOM05D000741 ORTHO05D000506 1.6e-06 56.2 60 48.3
Gohir.D13G191600 Gossypium hirsutum HOM05D000741 ORTHO05D000506 1.6e-06 56.2 33 75.8
Rhsim01G0187600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.6e-06 56.2 67 49.3
Rhsim01G0188700 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.6e-06 56.2 67 49.3
CSS0010247 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000506 2.1e-06 55.8 57 49.1
QL04p082033 Quercus lobata HOM05D000013 ORTHO05D000011 2.1e-06 55.8 43 60.5
Rhsim01G0039100 Rhododendron simsii HOM05D000741 ORTHO05D000506 2.1e-06 55.8 37 70.3
RcHm_v2.0_Chr2g0086301 Rosa chinensis HOM05D000013 ORTHO05D000506 2.1e-06 55.8 49 59.2
Cc06_g15450 Coffea canephora HOM05D000013 ORTHO05D000506 2.8e-06 55.5 33 75.8
MBI18_g34831_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 2.8e-06 55.5 59 49.2
Prupe.7G258600 Prunus persica HOM05D000741 ORTHO05D000506 2.8e-06 55.5 54 53.7
Prupe.7G258700 Prunus persica HOM05D000013 ORTHO05D000506 2.8e-06 55.5 37 67.6
Prupe.7G258800 Prunus persica HOM05D000741 ORTHO05D000506 2.8e-06 55.5 37 67.6
QL02p092207 Quercus lobata HOM05D000013 ORTHO05D000506 2.8e-06 55.5 39 66.7
Rhsim01G0040600 Rhododendron simsii HOM05D000741 ORTHO05D000506 2.8e-06 55.5 55 49.1
Sc08g0005500 Simmondsia chinensis HOM05D000013 ORTHO05D028526 2.8e-06 55.5 58 50.0
Atru.chr1.2736 Acer truncatum HOM05D000013 ORTHO05D000506 3.6e-06 55.1 38 68.4
Eucgr.C00397 Eucalyptus grandis HOM05D000741 ORTHO05D000506 3.6e-06 55.1 37 64.9
Gohir.A05G050500 Gossypium hirsutum HOM05D000741 ORTHO05D000506 3.6e-06 55.1 88 37.5
QL02p077764 Quercus lobata HOM05D000741 ORTHO05D000506 3.6e-06 55.1 39 66.7
QL02p092109 Quercus lobata HOM05D000013 ORTHO05D000506 3.6e-06 55.1 39 66.7
QL02p092297 Quercus lobata HOM05D000013 ORTHO05D000506 3.6e-06 55.1 39 66.7
Atru.chr2.2661 Acer truncatum HOM05D000013 ORTHO05D010831 4.7e-06 54.7 36 63.9
Cc06_g15440 Coffea canephora HOM05D000741 ORTHO05D000506 4.7e-06 54.7 37 67.6
DCAR_008099 Daucus carota HOM05D000013 ORTHO05D000011 4.7e-06 54.7 34 70.6
Gorai.009G053900 Gossypium raimondii HOM05D000741 ORTHO05D000506 4.7e-06 54.7 88 39.8
Lj9C712T3 Lonicera japonica HOM05D000741 ORTHO05D000506 4.7e-06 54.7 35 71.4
MBI18_g30350_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 4.7e-06 54.7 41 53.7
MD15G1156200 Malus domestica HOM05D000741 ORTHO05D000506 4.7e-06 54.7 38 65.8
MD15G1156900 Malus domestica HOM05D000741 ORTHO05D000506 4.7e-06 54.7 38 65.8
Nn1g06869 Nelumbo nucifera HOM05D000013 ORTHO05D000011 4.7e-06 54.7 55 50.9
Oeu050469.2 Olea europaea HOM05D000741 ORTHO05D000506 4.7e-06 54.7 33 66.7
QL02p092160 Quercus lobata HOM05D000013 ORTHO05D000506 4.7e-06 54.7 39 66.7
QL05p022816 Quercus lobata HOM05D000013 ORTHO05D000011 4.7e-06 54.7 53 52.8
Rhsim01G0039800 Rhododendron simsii HOM05D000741 ORTHO05D000506 4.7e-06 54.7 70 48.6
CANSAT11G2556 Cannabis sativa HOM05D000741 ORTHO05D000506 6.2e-06 54.3 38 63.2
Duzib150G0724 Durio zibethinus HOM05D000741 ORTHO05D000506 6.2e-06 54.3 62 50.0
FAN11G1270 Fragaria x ananassa HOM05D000013 ORTHO05D000011 6.2e-06 54.3 53 52.8
FAN16G1341 Fragaria x ananassa HOM05D000013 ORTHO05D000011 6.2e-06 54.3 53 52.8
Glyma.15G206400 Glycine max HOM05D000741 ORTHO05D000506 6.2e-06 54.3 37 64.9
Potri.018G111800 Populus trichocarpa HOM05D000741 ORTHO05D000506 6.2e-06 54.3 79 44.3
Thecc.07G067100 Theobroma cacao HOM05D000013 ORTHO05D000011 6.2e-06 54.3 80 38.8
TWI34G0017 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 6.2e-06 54.3 37 67.6
Aa31LG2G21710 Aethionema arabicum HOM05D000022 ORTHO05D000744 8.1e-06 53.9 77 40.3
FAN11G0510 Fragaria x ananassa HOM05D000013 ORTHO05D000011 8.1e-06 53.9 38 65.8
Glyma.10G253400 Glycine max HOM05D000022 ORTHO05D000071 8.1e-06 53.9 78 41.0
Gohir.A07G025280 Gossypium hirsutum HOM05D000741 ORTHO05D000506 8.1e-06 53.9 38 60.5
Potri.018G111700 Populus trichocarpa HOM05D000741 ORTHO05D000506 8.1e-06 53.9 79 44.3
Thecc.09G035900 Theobroma cacao HOM05D000741 ORTHO05D000506 8.1e-06 53.9 58 51.7


User provided reference genes

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