Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 4.1e-258 895.2 900 100.0
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 4.1e-197 692.6 896 90.6
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 7.3e-154 548.9 877 81.8
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 2.5e-146 523.9 881 82.7
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.9e-141 507.7 869 78.6
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 9.9e-119 432.2 871 77.4
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 2.5e-114 417.5 869 76.8
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 2.5e-114 417.5 875 76.2
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 4.0e-112 410.2 875 76.0
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.5e-111 408.3 871 76.8
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 3.8e-110 403.7 879 70.6
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 3.8e-110 403.7 874 69.5
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.9e-109 401.4 871 73.4
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 9.3e-109 399.1 880 70.3
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.0e-107 395.6 869 73.4
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.3e-107 395.2 867 74.9
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 1.8e-107 394.8 874 70.4
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 3.9e-107 393.7 879 70.8
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 9.6e-106 389.0 870 71.1
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.3e-105 388.7 882 70.6
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 2.1e-105 387.9 883 70.3
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 1.4e-104 385.2 878 74.1
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 2.4e-104 384.4 875 63.8
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 5.8e-103 379.8 880 65.8
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 7.6e-103 379.4 872 74.3
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.0e-99 369.0 878 70.5
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.0e-99 369.0 878 70.5
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 3.0e-99 367.5 881 69.0
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 1.5e-98 365.2 882 71.8
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.9e-98 364.8 882 71.8
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 2.2e-94 351.3 876 69.9
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 9.3e-93 345.9 874 69.0
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.6e-92 344.0 873 69.6
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 4.6e-92 343.6 895 68.8
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 3.9e-91 340.5 875 64.3
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.3e-89 335.5 883 69.0
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.2e-87 328.9 869 68.2
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 7.7e-87 326.2 874 64.5
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 2.5e-85 321.2 880 70.2
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 4.2e-85 320.5 882 66.7
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 7.2e-85 319.7 877 70.4
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 2.7e-84 317.8 880 63.9
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 3.6e-84 317.4 874 68.4
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 2.3e-83 314.7 869 67.8
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 2.6e-82 311.2 880 69.4
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.3e-81 308.9 877 69.7
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.7e-81 308.5 881 65.4
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 6.3e-81 306.6 877 68.9
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 1.1e-80 305.8 880 69.8
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.2e-79 302.4 870 68.2
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.6e-79 301.2 870 68.0
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.1e-77 295.8 870 67.9
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 3.2e-77 294.3 876 67.2
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.3e-74 284.3 850 65.3
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 3.3e-74 284.3 883 64.1
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 9.7e-74 282.7 877 68.1
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 4.8e-73 280.4 877 67.7
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 4.8e-73 280.4 877 67.6
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 4.1e-72 277.3 878 65.6
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 5.3e-72 276.9 880 68.5
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 4.5e-71 273.9 377 72.9
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 5.0e-70 270.4 871 70.0
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 8.5e-70 269.6 861 63.5
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 3.2e-69 267.7 876 67.6
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.7e-68 264.6 201 66.7
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 6.1e-68 263.5 377 71.6
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 5.2e-67 260.4 786 73.7
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 8.8e-67 259.6 875 67.4
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 2.6e-66 258.1 869 69.4
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 5.7e-66 256.9 444 59.7
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 5.7e-66 256.9 365 72.6
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 7.5e-66 256.5 377 72.1
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 2.2e-65 255.0 883 64.1
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 2.4e-64 251.5 896 64.0
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.2e-63 249.2 875 67.5
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 1.6e-63 248.8 365 72.3
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 2.7e-63 248.1 365 72.1
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 5.0e-62 243.8 897 58.2
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 5.5e-61 240.4 867 68.6
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.1e-60 238.4 840 66.8
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.0e-59 236.1 840 66.7
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 3.0e-59 234.6 880 65.6
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 1.5e-58 232.3 196 56.6
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 9.8e-58 229.6 388 67.3
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 4.8e-57 227.3 881 61.6
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 9.1e-56 223.0 377 66.6
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.3e-54 218.4 413 52.5
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.8e-54 217.6 373 68.4
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 1.0e-51 209.5 834 62.6
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 2.5e-45 188.3 883 62.7
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 1.8e-43 182.2 180 50.6
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 7.5e-42 176.8 176 51.7
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 1.0e-38 166.4 382 59.2
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.1e-35 156.4 380 60.0
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 5.2e-35 154.1 394 58.9
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 1.1e-32 146.4 902 35.3
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 2.7e-31 141.7 746 70.4
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 3.0e-30 138.3 325 66.2
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 8.6e-30 136.7 184 39.7
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 1.9e-29 135.6 254 37.4
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.4e-27 129.4 252 35.3
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.2e-26 126.3 147 46.9
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 6.4e-25 120.6 397 55.2
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 7.1e-24 117.1 149 43.6
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.8e-19 102.4 101 51.5
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 4.2e-16 91.3 112 50.9
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 9.0e-11 73.6 64 57.8
Gorai.001G138600 Gossypium raimondii HOM05D006556 ORTHO05D025699 7.6e-10 70.5 53 62.3
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 1.2e-07 63.2 71 47.9
Gorai.010G128600 Gossypium raimondii HOM05D024651 ORTHO05D019476 1.3e-06 59.7 73 43.8


User provided reference genes

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