Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.1e-156 554.7 281 100.0
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.5e-137 493.0 264 96.2
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.1e-107 392.9 266 77.8
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.2e-94 350.5 266 69.9
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.0e-93 347.4 266 69.5
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 8.2e-88 327.8 266 66.5
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.6e-86 322.8 266 63.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.5e-86 322.0 272 63.6
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 5.9e-86 321.6 264 62.9
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.9e-86 321.6 266 64.7
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.7e-85 320.1 266 64.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 8.5e-85 317.8 266 63.5
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 8.5e-85 317.8 272 62.9
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.6e-83 312.4 266 63.9
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.2e-81 307.4 266 60.9
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 5.7e-81 305.1 269 62.8
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.5e-81 304.7 266 62.4
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 7.5e-81 304.7 266 62.4
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.3e-80 303.9 266 61.7
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.7e-80 303.5 266 61.3
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 8.2e-80 301.2 267 61.4
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.4e-79 300.4 265 60.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.0e-78 296.6 247 64.4
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 4.5e-78 295.4 284 59.5
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.8e-77 292.4 266 60.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.2e-76 289.3 269 59.5
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 3.2e-76 289.3 267 59.2
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.2e-76 288.9 268 61.6
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 5.5e-76 288.5 253 62.1
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.6e-75 285.8 266 58.3
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.8e-74 281.6 268 60.8
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.4e-73 279.3 268 59.7
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.3e-72 277.3 263 56.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.4e-71 273.9 276 58.7
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.8e-71 273.5 258 59.7
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.1e-71 272.3 269 57.6
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.3e-69 266.5 268 57.1
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 6.5e-69 265.0 266 55.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 7.2e-68 261.5 271 56.5
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.1e-67 258.5 246 60.2
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 8.0e-67 258.1 266 54.1
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.5e-65 253.8 228 61.4
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 3.1e-63 246.1 271 53.9
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.0e-62 243.4 266 51.9
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.9e-61 239.6 270 54.1
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.0e-61 238.8 270 53.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 8.9e-58 228.0 252 54.4
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 5.7e-57 225.3 252 54.4
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.3e-56 224.2 244 54.9
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 6.4e-56 221.9 266 48.9
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 5.4e-55 218.8 266 49.2
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.0e-55 218.4 210 59.0
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.2e-54 217.6 267 53.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.8e-54 214.9 270 49.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 5.0e-53 212.2 246 52.8
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.1e-51 206.8 276 49.6
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 8.0e-51 204.9 266 47.4
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.0e-50 202.6 210 55.2
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 2.6e-49 199.9 245 51.0
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.4e-49 199.5 269 46.1
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.7e-48 196.1 266 45.5
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.4e-47 193.4 229 52.0
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.3e-45 186.8 263 46.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.0e-45 185.7 263 45.2
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 3.3e-44 183.0 251 46.2
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.3e-44 182.6 275 41.5
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.1e-43 180.3 260 44.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.1e-43 180.3 269 40.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.2e-41 174.5 266 42.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.2e-41 174.5 272 42.3
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.2e-41 174.5 273 42.5
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.5e-41 174.1 273 42.5
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 3.7e-40 169.5 270 41.5
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.4e-39 165.6 270 41.5
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 3.5e-38 162.9 263 42.2
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 2.3e-37 160.2 274 41.6
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 3.9e-37 159.5 267 41.6
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.9e-36 157.1 150 56.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.6e-35 154.1 269 39.4
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.1e-35 153.7 286 39.5
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.7e-35 152.5 249 41.0
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.4e-33 146.4 242 44.2
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.8e-33 145.6 180 50.6
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 7.6e-33 145.2 192 46.9
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 3.8e-32 142.9 247 40.1
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 6.4e-32 142.1 267 40.1
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 6.4e-32 142.1 261 37.2
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.6e-30 136.0 150 52.7
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 7.8e-30 135.2 263 39.5
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.7e-29 134.0 150 52.0
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 3.0e-29 133.3 279 34.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 8.7e-29 131.7 247 40.5
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.1e-28 131.3 179 46.9
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-28 130.6 112 62.5
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.9e-28 130.6 282 34.4
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.5e-28 130.2 256 38.3
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 2.5e-28 130.2 253 39.1
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.3e-28 129.8 266 36.5
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.3e-28 129.8 270 37.8
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-28 129.0 114 63.2
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 7.3e-28 128.6 263 32.7
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 9.6e-28 128.3 263 35.4
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 9.6e-28 128.3 263 32.7
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.2e-27 125.6 112 59.8
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 6.2e-27 125.6 216 38.9
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 8.1e-27 125.2 262 37.8
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.8e-26 124.0 266 37.2
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.5e-25 120.9 136 52.2
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.6e-25 120.2 270 37.8
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.4e-25 119.4 266 38.0
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 7.6e-25 118.6 258 35.7
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.9e-24 116.7 270 36.3
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 4.9e-24 115.9 255 36.9
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.4e-24 115.5 270 37.0
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 8.4e-24 115.2 270 35.6
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 5.4e-23 112.5 266 33.8
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.1e-22 110.5 261 34.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 5.1e-21 105.9 254 36.2
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 5.1e-21 105.9 260 34.6
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.5e-20 104.4 224 39.3
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 5.6e-20 102.4 250 33.6
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 9.6e-20 101.7 261 34.1
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.6e-19 100.9 202 41.6
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.1e-18 98.2 267 33.0
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.8e-18 97.4 261 31.4
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.2e-17 94.7 260 32.3
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 4.5e-17 92.8 101 49.5
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.8e-17 92.4 246 31.7
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.3e-16 91.3 252 31.0
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.7e-16 90.9 248 30.6
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 2.9e-16 90.1 197 34.0
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.9e-15 87.4 122 42.6
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.4e-15 87.0 266 32.0
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.4e-15 87.0 90 50.0
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.2e-14 84.7 264 29.9
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 3.5e-14 83.2 131 41.2
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 4.6e-14 82.8 97 48.5
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.9e-13 79.7 222 32.9
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 3.9e-13 79.7 186 34.4
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 6.7e-13 79.0 200 32.5
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.9e-12 77.4 181 35.4
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.5e-12 77.0 185 35.7
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 3.3e-12 76.6 324 28.7
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.3e-12 76.3 245 31.4
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 7.4e-12 75.5 243 29.2
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.3e-11 74.7 219 31.5
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 2.1e-11 73.9 56 64.3
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.1e-11 73.9 260 31.5
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 3.7e-11 73.2 57 64.9
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.7e-11 73.2 57 64.9
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.8e-10 70.9 243 29.2
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 4.0e-10 69.7 49 71.4
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 4.0e-10 69.7 203 31.0
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 5.3e-10 69.3 56 66.1
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 9.0e-10 68.6 57 63.2
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 2.0e-09 67.4 222 30.2
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.4e-09 66.6 53 69.8
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 3.4e-09 66.6 243 29.6
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 9.9e-09 65.1 53 67.9
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 8.4e-08 62.0 103 39.8
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 1.1e-07 61.6 186 31.7
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.4e-07 61.2 53 64.2
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.9e-07 60.8 203 29.1
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 3.2e-07 60.1 129 32.6
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.5e-07 59.3 64 45.3
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.1e-06 57.4 58 46.6
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.7e-06 57.0 198 28.8
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 3.5e-06 56.6 79 41.8


User provided reference genes

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