Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 3129.3 1593 100.0
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 2962.2 1661 91.4
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 2248.4 1738 68.9
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1961.8 1385 73.5
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1793.5 1650 58.5
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1779.6 1629 59.5
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1765.4 1650 58.5
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1755.0 1613 58.4
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1749.2 1599 58.3
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1747.6 1628 58.5
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1744.9 1651 57.1
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1718.4 1642 57.3
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1701.8 1642 56.8
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1687.9 1616 57.5
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1677.1 1628 56.5
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1670.2 1600 56.1
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1666.7 1615 56.8
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1664.4 1605 56.5
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1658.7 1630 55.9
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1649.8 1603 55.9
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1649.4 1595 56.6
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1649.0 1643 54.4
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1647.5 1603 55.8
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1642.5 1277 65.3
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1641.3 1641 55.2
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1640.9 1629 57.0
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1632.1 1603 55.2
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1624.8 1644 55.0
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1621.7 1603 54.5
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1621.3 1647 54.0
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1612.4 1635 54.5
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1610.1 1490 58.5
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1608.6 1659 53.9
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1602.0 1619 53.9
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1590.9 1644 53.7
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1584.3 1641 52.8
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1580.8 1658 53.3
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1573.9 1660 53.3
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1572.4 1622 53.1
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1562.0 1624 53.6
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1552.0 1661 51.4
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1541.6 1622 52.5
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1540.4 1628 51.7
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1523.8 1651 53.6
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 0.0e+00 1517.3 1510 57.0
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1516.1 1626 51.9
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1501.5 1620 52.2
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1490.3 1636 50.7
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1482.6 1805 47.9
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 1476.8 1551 52.2
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1450.6 1433 55.6
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1445.6 1234 60.1
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1440.6 1597 49.7
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1438.3 1611 49.6
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1437.6 1592 49.3
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1433.3 1587 49.3
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1432.5 1624 49.3
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 1428.7 1510 52.5
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1422.5 1676 48.9
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1420.6 1623 49.0
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1415.6 1602 50.2
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1411.4 1600 49.1
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1400.2 1503 52.0
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1373.6 1627 48.9
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1369.4 1621 47.6
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1368.2 1585 48.8
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1366.7 1601 47.3
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1360.1 1621 47.7
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1347.4 1584 47.4
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1345.5 1616 48.4
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 1340.1 1642 47.1
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1338.6 1616 48.1
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1336.6 1563 48.2
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1335.1 1713 46.2
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1325.8 1584 47.4
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1325.8 1563 48.5
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1318.1 1571 47.0
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1312.4 1651 47.1
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1307.4 1577 47.6
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 0.0e+00 1296.6 1573 47.2
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1270.4 1568 47.0
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 0.0e+00 1243.0 1085 58.2
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 0.0e+00 1239.2 1533 46.4
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 0.0e+00 1234.9 1619 45.1
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 1221.1 1667 42.7
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1189.9 803 79.2
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 0.0e+00 1172.1 1644 44.1
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1167.9 1334 48.7
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 0.0e+00 1166.8 1496 44.7
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 0.0e+00 1166.4 1341 48.6
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 0.0e+00 1164.4 1349 48.2
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1159.4 1346 47.8
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1149.0 1019 59.6
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 0.0e+00 1126.7 1591 41.1
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 0.0e+00 1119.4 1593 41.4
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 2.2e-310 1069.7 965 57.5
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 8.5e-299 1031.2 1630 40.2
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.1e-205 721.8 1631 32.2
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.5e-202 711.4 1019 41.2
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 4.8e-201 706.4 778 51.3
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 6.3e-193 679.5 1574 32.6
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 5.2e-187 659.8 1693 30.8
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 2.8e-172 610.9 568 56.2
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 4.6e-167 593.6 814 42.5
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 4.0e-163 580.5 899 38.5
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 7.8e-159 566.2 823 40.6
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 5.1e-150 537.0 1253 29.3
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 1.2e-148 532.3 741 42.8
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 1.4e-136 492.3 560 48.2
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 3.2e-136 491.1 698 43.6
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 1.7e-134 485.3 1545 27.8
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 2.4e-131 474.9 402 61.2
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 9.6e-117 426.4 550 46.0
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.2e-112 411.0 514 44.2
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 1.5e-106 392.5 302 66.2
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.6e-93 348.6 628 38.7
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 3.7e-76 291.6 193 72.5
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.0e-65 256.9 425 38.8
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 4.1e-59 235.0 421 40.1
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 7.0e-59 234.2 478 34.9
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.1e-55 222.6 126 80.2
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 1.1e-48 200.3 915 25.5
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 2.4e-43 182.6 129 69.8
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 2.8e-39 169.1 305 41.0
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 5.2e-38 164.9 292 39.4
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.8e-38 164.5 228 41.2
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 5.8e-37 161.4 167 47.9
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 7.1e-35 154.5 127 63.8
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 8.6e-33 147.5 159 53.5
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 6.2e-31 141.4 130 52.3
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 1.8e-30 139.8 323 35.0
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 8.9e-30 137.5 122 53.3
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.8e-29 134.8 203 39.4
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.6e-29 134.4 203 38.4
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.4e-28 131.0 175 42.3
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.1e-27 130.6 203 37.4
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.4e-27 129.4 203 37.4
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-25 123.2 147 42.9
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.5e-24 120.2 188 37.2
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 9.9e-21 107.5 142 42.3
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.7e-20 106.7 142 41.5
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.9e-20 105.9 260 34.2
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-19 103.6 142 41.5
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.4e-19 102.8 142 40.8
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.1e-19 101.3 142 40.8
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 6.6e-17 94.7 73 63.0
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.7e-17 94.4 120 41.7
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 2.5e-16 92.8 1364 21.1
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 3.3e-16 92.4 73 63.0
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.1e-15 87.8 127 40.9
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 5.4e-11 75.1 109 36.7
Medtr2g060610 Medicago truncatula HOM05D004423 ORTHO05D005464 7.4e-08 64.7 74 50.0
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 7.4e-08 64.7 350 23.4
Haze_02079 Corylus avellana HOM05D004423 ORTHO05D164676 4.8e-07 62.0 41 75.6
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.0e-06 58.9 111 27.9
Medtr2g060570 Medicago truncatula HOM05D004423 ORTHO05D005464 5.3e-06 58.5 96 39.6
Medtr2g060590 Medicago truncatula HOM05D004423 ORTHO05D005464 6.9e-06 58.2 103 35.9


User provided reference genes

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