Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.3e-131 473.0 236 100.0
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 8.1e-121 437.2 237 93.7
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 4.9e-94 348.2 184 93.5
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.1e-93 347.1 178 96.6
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.3e-91 340.1 178 93.3
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 1.5e-90 336.7 178 92.7
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 7.4e-90 334.3 178 92.1
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 1.3e-89 333.6 178 92.1
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 4.1e-88 328.6 178 89.9
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 9.0e-88 327.4 178 88.8
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 4.5e-87 325.1 178 88.2
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 4.5e-87 325.1 178 88.2
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 4.5e-87 325.1 178 87.6
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 7.6e-87 324.3 178 87.1
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 1.3e-86 323.6 178 87.6
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 2.2e-86 322.8 178 87.1
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 2.2e-86 322.8 183 84.2
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 8.4e-86 320.9 178 86.5
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 8.4e-86 320.9 178 87.6
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.1e-85 320.5 178 87.1
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.4e-85 320.1 178 87.1
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.4e-85 320.1 178 87.1
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 1.4e-85 320.1 178 85.4
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.5e-85 319.3 178 86.0
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 3.2e-85 318.9 178 86.5
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 4.2e-85 318.5 180 83.3
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 4.2e-85 318.5 178 86.5
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 5.5e-85 318.2 178 85.4
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 9.3e-85 317.4 178 86.0
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 9.3e-85 317.4 178 84.8
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.6e-84 316.6 178 83.7
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.6e-84 316.6 178 83.7
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.1e-84 316.2 189 79.4
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 2.7e-84 315.8 194 79.9
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 2.7e-84 315.8 180 83.9
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 2.7e-84 315.8 178 84.3
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 2.7e-84 315.8 178 86.5
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 3.5e-84 315.5 178 86.0
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 3.5e-84 315.5 178 84.3
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 3.5e-84 315.5 178 84.3
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 4.6e-84 315.1 176 86.9
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 4.6e-84 315.1 178 85.4
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 6.1e-84 314.7 174 86.2
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 6.1e-84 314.7 178 85.4
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 6.1e-84 314.7 178 83.7
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 7.9e-84 314.3 178 84.3
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 7.9e-84 314.3 178 83.1
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 7.9e-84 314.3 178 83.1
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 7.9e-84 314.3 178 83.1
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 7.9e-84 314.3 178 84.3
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.0e-83 313.9 178 83.7
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.0e-83 313.9 178 83.7
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.8e-83 313.2 178 86.0
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.8e-83 313.2 178 84.3
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 2.3e-83 312.8 178 83.7
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 3.0e-83 312.4 178 84.3
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 3.0e-83 312.4 178 84.3
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 3.9e-83 312.0 173 86.7
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 3.9e-83 312.0 178 83.1
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 3.9e-83 312.0 178 83.1
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 3.9e-83 312.0 178 83.1
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 6.7e-83 311.2 178 83.7
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 6.7e-83 311.2 174 84.5
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 8.7e-83 310.8 178 83.1
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 1.9e-82 309.7 178 81.5
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.5e-82 309.3 176 83.0
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 3.3e-82 308.9 178 82.6
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 3.3e-82 308.9 178 84.3
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 3.3e-82 308.9 178 83.7
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 3.3e-82 308.9 178 83.1
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 4.3e-82 308.5 178 83.7
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 4.3e-82 308.5 178 84.3
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 4.3e-82 308.5 174 84.5
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 5.7e-82 308.1 178 84.3
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 7.4e-82 307.8 178 82.6
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 1.3e-81 307.0 178 84.3
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 1.3e-81 307.0 178 84.3
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.6e-81 306.6 183 78.7
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 1.6e-81 306.6 178 81.5
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 2.2e-81 306.2 178 82.6
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 3.7e-81 305.4 178 83.1
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 4.8e-81 305.1 179 81.0
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 4.8e-81 305.1 177 80.8
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 4.8e-81 305.1 178 81.5
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 4.8e-81 305.1 204 74.0
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 6.3e-81 304.7 178 81.5
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 6.3e-81 304.7 178 80.3
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 6.3e-81 304.7 191 78.5
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.1e-80 303.9 178 81.5
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 1.4e-80 303.5 178 82.6
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.8e-80 303.1 178 82.0
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 1.8e-80 303.1 178 80.3
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 1.8e-80 303.1 178 80.3
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 3.1e-80 302.4 178 80.3
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 4.1e-80 302.0 178 80.9
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 5.3e-80 301.6 178 80.9
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 5.3e-80 301.6 178 80.9
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 6.9e-80 301.2 178 80.9
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 6.9e-80 301.2 178 81.5
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 1.2e-79 300.4 178 80.9
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 1.5e-79 300.1 174 82.2
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 1.5e-79 300.1 178 80.3
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.5e-79 300.1 188 77.7
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.5e-79 300.1 188 77.7
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 2.6e-79 299.3 178 80.9
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 2.6e-79 299.3 181 79.0
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 3.4e-79 298.9 205 73.2
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.0e-78 297.4 174 81.0
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.0e-78 297.4 178 79.2
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 8.5e-78 294.3 174 80.5
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 8.5e-78 294.3 174 80.5
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 8.5e-78 294.3 228 66.7
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 1.4e-77 293.5 174 80.5
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 4.2e-77 292.0 174 79.9
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 4.2e-77 292.0 174 79.9
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 7.2e-77 291.2 159 86.8
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 8.2e-73 277.7 221 64.7
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.0e-67 260.8 170 77.6
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 5.1e-67 258.5 178 70.2
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.1e-66 257.3 178 68.0
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 2.6e-66 256.1 183 69.4
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 9.7e-66 254.2 178 69.1
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 1.1e-64 250.8 174 71.8
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 1.4e-56 223.8 178 61.2
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 1.8e-56 223.4 127 83.5
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 5.3e-56 221.9 178 57.9
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 9.1e-56 221.1 178 65.7
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.3e-54 217.2 121 82.6
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.8e-51 206.8 139 71.2
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 4.8e-49 198.7 118 78.0
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 6.3e-49 198.4 173 56.1
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 5.4e-48 195.3 178 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 2.1e-44 183.3 130 67.7
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 1.9e-37 160.2 86 87.2
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 1.4e-35 154.1 95 78.9
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 3.0e-35 152.9 78 91.0
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 3.0e-35 152.9 78 91.0
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-33 145.2 84 77.4
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 5.9e-31 138.7 96 69.8
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.1e-28 130.2 155 49.0
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.7e-28 129.0 78 75.6
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 3.1e-27 126.3 166 45.2
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 3.7e-25 119.4 71 76.1
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.4e-24 117.5 107 62.6
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.5e-21 107.5 177 35.6
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.4e-18 96.3 52 82.7
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.4e-16 90.9 46 89.1
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 1.4e-16 90.9 52 84.6
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.5e-13 80.1 50 82.0
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 1.9e-08 63.9 29 96.6
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 1.2e-07 61.2 117 29.9
Cfa009309 Carpinus fangiana HOM05D000424 ORTHO05D008586 3.5e-07 59.7 34 85.3
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 7.8e-07 58.5 113 29.2
VMungo1309G1294 Vigna mungo HOM05D002771 ORTHO05D003078 1.3e-06 57.8 125 27.2
Haze_12363 Corylus avellana HOM05D000424 ORTHO05D008586 2.3e-06 57.0 35 80.0
CAN.G933.13 Capsicum annuum HOM05D002015 ORTHO05D017741 3.0e-06 56.6 57 49.1


User provided reference genes

Program Settings