Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 2.2e-86 322.4 182 100.0
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 3.8e-78 295.0 177 97.7
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 2.3e-43 179.5 131 70.2
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 1.5e-37 160.2 127 63.0
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 1.9e-37 159.8 161 54.7
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 4.3e-37 158.7 134 61.2
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 1.2e-36 157.1 137 61.3
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 2.1e-36 156.4 134 60.4
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 2.0e-34 149.8 140 56.4
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.7e-33 146.7 135 59.3
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.2e-33 146.4 121 63.6
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.8e-33 145.6 121 63.6
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 8.4e-33 144.4 126 57.9
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 1.1e-32 144.1 121 62.8
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.1e-32 144.1 121 62.8
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 5.4e-32 141.7 134 56.0
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 1.2e-31 140.6 118 60.2
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 3.0e-30 136.0 117 59.8
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.8e-27 126.7 119 54.6
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 4.4e-26 122.1 134 50.0
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 7.1e-24 114.8 153 47.7
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 9.3e-24 114.4 145 48.3
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.7e-23 112.8 145 47.6
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 3.5e-23 112.5 133 49.6
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 6.0e-23 111.7 144 45.8
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 3.0e-22 109.4 105 54.3
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 3.9e-22 109.0 153 47.1
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 5.1e-22 108.6 138 42.8
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 5.1e-22 108.6 138 42.8
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.1e-21 107.5 153 46.4
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 2.5e-21 106.3 134 46.3
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 3.3e-21 105.9 139 46.8
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 3.3e-21 105.9 128 48.4
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 1.3e-20 104.0 116 51.7
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 1.6e-20 103.6 116 49.1
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.6e-18 96.3 116 48.3
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 1.7e-17 93.6 120 48.3
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 2.9e-17 92.8 92 53.3
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 2.9e-17 92.8 132 42.4
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.8e-17 92.4 115 49.6
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 4.9e-17 92.0 134 44.8
vmacro17329 Vaccinium macrocarpon HOM05D007970 ORTHO05D009943 4.2e-16 89.0 96 52.1
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 3.5e-15 85.9 100 45.0
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 7.9e-15 84.7 114 48.2
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.0e-14 84.3 129 45.0
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 1.3e-14 84.0 92 50.0
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 1.8e-14 83.6 110 49.1
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 3.0e-14 82.8 114 46.5
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 8.7e-14 81.3 110 44.5
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 1.9e-13 80.1 130 40.8
Gohir.A01G170700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 5.6e-13 78.6 137 38.0
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.6e-13 78.6 119 44.5
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 9.6e-13 77.8 92 45.7
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 1.6e-12 77.0 100 43.0
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 4.8e-12 75.5 96 49.0
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 6.2e-12 75.1 92 46.7
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 1.8e-11 73.6 114 40.4
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.1e-11 72.8 81 45.7
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 5.3e-11 72.0 120 40.8
Peaxi162Scf00078g00137 Petunia axillaris HOM05D007970 ORTHO05D009943 5.3e-11 72.0 94 43.6
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 5.3e-11 72.0 90 46.7
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 9.0e-11 71.2 75 49.3
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.0e-10 70.1 91 50.5
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 5.8e-10 68.6 88 45.5
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 7.6e-10 68.2 76 50.0
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 7.6e-10 68.2 76 51.3
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 7.6e-10 68.2 119 38.7
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 9.9e-10 67.8 117 41.0
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.3e-09 67.4 92 42.4
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 1.3e-09 67.4 121 41.3
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 1.3e-09 67.4 90 43.3
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.3e-09 67.4 79 44.3
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 1.7e-09 67.0 77 51.9
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 1.7e-09 67.0 91 42.9
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 1.7e-09 67.0 83 48.2
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.7e-09 67.0 75 48.0
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.7e-09 67.0 75 48.0
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.7e-09 67.0 75 48.0
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 2.2e-09 66.6 85 48.2
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.2e-09 66.6 122 37.7
Lj9P400T40 Lonicera japonica HOM05D007970 ORTHO05D009943 2.9e-09 66.2 130 37.7
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 2.9e-09 66.2 67 46.3
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 3.8e-09 65.9 100 42.0
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 4.9e-09 65.5 106 43.4
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 4.9e-09 65.5 74 47.3
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.1e-08 64.3 95 45.3
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 1.1e-08 64.3 90 44.4
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 1.4e-08 63.9 105 41.9
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 1.9e-08 63.5 114 40.4
Migut.B00057 Erythranthe guttata HOM05D007970 ORTHO05D009943 1.9e-08 63.5 113 37.2
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.9e-08 63.5 88 46.6
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 2.4e-08 63.2 105 39.0
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 2.4e-08 63.2 122 37.7
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 2.4e-08 63.2 119 39.5
Sed0004456 Sechium edule HOM05D007970 ORTHO05D009943 2.4e-08 63.2 86 47.7
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.2e-08 62.4 97 44.3
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.2e-08 62.4 97 44.3
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 4.2e-08 62.4 93 49.5
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 5.5e-08 62.0 95 44.2
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 5.5e-08 62.0 97 44.3
Medtr1g112960 Medicago truncatula HOM05D007970 ORTHO05D009943 5.5e-08 62.0 82 46.3
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 5.5e-08 62.0 121 36.4
TPR.G2416 Trifolium pratense HOM05D062211 ORTHO05D009943 5.5e-08 62.0 130 37.7
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 5.5e-08 62.0 85 45.9
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 9.3e-08 61.2 83 47.0
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.2e-07 60.8 84 45.2
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.2e-07 60.8 82 45.1
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 1.2e-07 60.8 69 47.8
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.6e-07 60.5 95 41.1
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 2.7e-07 59.7 92 45.7
Nitab4.5_0000079g0240 Nicotiana tabacum HOM05D007970 ORTHO05D009943 4.6e-07 58.9 67 46.3
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 6.0e-07 58.5 86 44.2
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 6.0e-07 58.5 77 49.4
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 6.0e-07 58.5 120 34.2
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 7.9e-07 58.2 107 43.0
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 7.9e-07 58.2 85 42.4
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.0e-06 57.8 78 44.9
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.0e-06 57.8 92 40.2
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.0e-06 57.8 94 39.4
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 1.8e-06 57.0 118 39.8
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.8e-06 57.0 74 44.6
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 2.3e-06 56.6 75 48.0
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 3.0e-06 56.2 75 45.3
Sed0017981 Sechium edule HOM05D007970 ORTHO05D009943 3.0e-06 56.2 70 52.9
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 3.9e-06 55.8 72 45.8
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 3.9e-06 55.8 86 39.5
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 5.1e-06 55.5 76 43.4
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 6.7e-06 55.1 107 39.3
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 6.7e-06 55.1 85 38.8
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 6.7e-06 55.1 76 42.1
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 6.7e-06 55.1 90 44.4
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 8.7e-06 54.7 76 40.8


User provided reference genes

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