Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 1.5e-72 276.2 151 100.0
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 9.6e-59 230.3 150 86.0
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.9e-47 192.2 149 73.8
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 6.5e-47 191.0 153 70.6
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 2.7e-45 185.7 152 71.1
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.3e-44 182.6 149 70.5
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 9.6e-43 177.2 152 68.4
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 1.6e-42 176.4 152 67.1
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 2.1e-42 176.0 149 66.4
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.8e-42 175.6 144 66.0
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.8e-42 175.6 144 66.0
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 4.8e-42 174.9 144 70.1
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 4.8e-42 174.9 148 66.2
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 6.3e-42 174.5 149 66.4
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 1.8e-41 172.9 149 65.8
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 2.4e-41 172.6 148 68.2
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 4.1e-41 171.8 149 65.1
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 5.3e-41 171.4 158 63.9
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 5.3e-41 171.4 155 64.5
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 5.3e-41 171.4 155 64.5
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.2e-40 170.2 154 64.9
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 1.2e-40 170.2 147 64.6
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 1.5e-40 169.9 149 68.5
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.0e-40 169.5 155 64.5
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 2.6e-40 169.1 154 62.3
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 3.4e-40 168.7 149 64.4
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 3.4e-40 168.7 141 66.7
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 4.5e-40 168.3 148 66.9
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 7.6e-40 167.5 146 67.1
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 1.3e-39 166.8 149 63.8
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.7e-39 166.4 147 66.0
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.7e-39 166.4 152 66.4
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 6.5e-39 164.5 147 64.6
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 1.1e-38 163.7 149 64.4
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 1.1e-38 163.7 147 65.3
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 1.1e-38 163.7 150 64.0
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 1.4e-38 163.3 155 63.2
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.9e-38 162.9 147 65.3
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 2.5e-38 162.5 152 60.5
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 4.2e-38 161.8 145 64.8
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 5.5e-38 161.4 144 63.2
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 5.5e-38 161.4 145 64.8
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 9.3e-38 160.6 144 63.2
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.6e-37 159.8 144 61.8
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 1.6e-37 159.8 144 63.2
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 3.6e-37 158.7 154 63.6
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 3.6e-37 158.7 147 64.6
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 3.6e-37 158.7 143 60.8
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 3.6e-37 158.7 146 61.0
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 6.1e-37 157.9 143 62.2
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 6.1e-37 157.9 152 60.5
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 7.9e-37 157.5 144 61.8
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 7.9e-37 157.5 143 65.0
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 1.0e-36 157.1 143 60.1
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 1.3e-36 156.8 143 64.3
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 1.8e-36 156.4 150 61.3
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.8e-36 156.4 145 61.4
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 3.0e-36 155.6 140 64.3
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 3.9e-36 155.2 143 60.1
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 5.1e-36 154.8 141 63.8
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 5.1e-36 154.8 143 60.8
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 6.7e-36 154.5 143 62.2
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 6.7e-36 154.5 143 63.6
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 6.7e-36 154.5 143 62.2
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 6.7e-36 154.5 143 60.1
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 8.7e-36 154.1 140 63.6
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 8.7e-36 154.1 141 61.7
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 1.1e-35 153.7 149 61.1
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.5e-35 153.3 142 63.4
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 1.5e-35 153.3 144 63.9
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 1.9e-35 152.9 143 62.9
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 2.5e-35 152.5 142 59.9
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 3.3e-35 152.1 143 59.4
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 5.7e-35 151.4 141 66.0
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 7.4e-35 151.0 151 60.3
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 7.4e-35 151.0 144 56.9
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 2.2e-34 149.4 143 56.6
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 2.2e-34 149.4 151 58.9
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 2.8e-34 149.1 143 57.3
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 2.8e-34 149.1 147 61.9
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 4.8e-34 148.3 143 61.5
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 2.4e-33 146.0 144 56.9
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 2.4e-33 146.0 144 58.3
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 3.1e-33 145.6 136 63.2
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 9.1e-33 144.1 142 60.6
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 2.0e-32 142.9 153 56.9
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 1.0e-31 140.6 144 60.4
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 1.7e-31 139.8 151 56.3
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.9e-31 139.0 130 62.3
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 2.9e-31 139.0 139 60.4
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.9e-30 136.3 141 56.0
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 1.9e-30 136.3 139 55.4
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 2.5e-30 136.0 139 56.8
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 2.5e-30 136.0 144 54.9
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 3.2e-30 135.6 139 56.8
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 4.2e-30 135.2 143 56.6
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 5.5e-30 134.8 139 56.1
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 5.5e-30 134.8 139 57.6
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 7.2e-30 134.4 129 58.9
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 3.6e-29 132.1 142 56.3
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 6.1e-29 131.3 129 61.2
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 6.1e-29 131.3 139 56.8
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 5.1e-28 128.3 139 51.8
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 5.1e-28 128.3 139 51.8
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 5.1e-28 128.3 139 51.8
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 5.1e-28 128.3 139 51.8
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 8.8e-28 127.5 142 53.5
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.1e-27 127.1 157 52.2
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 3.3e-27 125.6 139 51.1
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 8.2e-26 120.9 146 49.3
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 6.9e-25 117.9 141 47.5
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 1.5e-24 116.7 125 58.4
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 7.7e-24 114.4 140 53.6
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 1.7e-23 113.2 148 48.6
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 7.9e-21 104.4 126 55.6
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 2.3e-20 102.8 135 50.4
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.0e-20 102.4 122 50.0
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.5e-19 100.1 140 44.3
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 1.7e-18 96.7 146 41.8
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 4.1e-17 92.0 71 67.6
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 5.3e-17 91.7 115 48.7
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 9.1e-17 90.9 142 40.1
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 4.5e-16 88.6 139 43.2
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 5.9e-16 88.2 70 65.7
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 6.1e-13 78.2 70 57.1
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 7.5e-11 71.2 141 35.5
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 5.3e-09 65.1 121 39.7
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 9.1e-09 64.3 44 75.0
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 7.7e-08 61.2 68 44.1
Zm00001eb181930 Zea mays HOM05D001107 ORTHO05D007353 1.1e-06 57.4 44 72.7
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.2e-06 55.8 67 47.8
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 9.4e-06 54.3 126 34.1


User provided reference genes

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