Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.3e-125 452.2 228 100.0
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 4.4e-124 448.0 228 98.2
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 4.2e-114 414.8 228 89.5
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.1e-109 400.2 228 84.2
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 5.3e-109 397.9 228 83.3
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.1e-105 386.0 226 82.7
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.7e-104 382.9 230 81.3
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 5.1e-104 381.3 225 82.2
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 5.1e-104 381.3 230 80.9
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 8.7e-104 380.6 226 80.5
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-103 379.8 228 79.8
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.9e-103 379.4 228 80.3
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 1.9e-103 379.4 225 80.9
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.3e-103 378.6 231 80.5
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 9.6e-103 377.1 228 79.8
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.6e-103 377.1 228 79.4
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 9.6e-103 377.1 228 80.3
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 2.1e-102 375.9 228 79.8
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 2.1e-102 375.9 228 81.1
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 2.8e-102 375.6 225 79.1
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.8e-102 375.6 228 79.8
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.6e-102 375.2 228 79.4
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 4.8e-102 374.8 228 78.1
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 6.2e-102 374.4 230 80.0
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 8.1e-102 374.0 226 79.2
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.1e-101 373.6 228 79.8
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.1e-101 373.6 226 79.6
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.1e-101 373.6 226 80.5
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.4e-101 373.2 228 78.5
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.4e-101 372.5 232 79.3
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.1e-101 372.1 228 80.3
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 4.0e-101 371.7 226 78.3
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 4.0e-101 371.7 218 81.7
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 4.0e-101 371.7 228 78.5
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 5.3e-101 371.3 228 78.1
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 5.3e-101 371.3 228 78.1
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 6.9e-101 370.9 228 77.6
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.0e-101 370.5 226 81.0
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-100 370.2 226 78.3
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.2e-100 370.2 228 79.8
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.2e-100 370.2 227 80.2
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-100 369.8 226 77.9
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.5e-100 369.8 226 81.0
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 2.6e-100 369.0 221 80.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.6e-100 369.0 226 77.4
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 3.4e-100 368.6 226 80.1
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 5.8e-100 367.9 219 82.6
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 5.8e-100 367.9 226 79.2
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 9.9e-100 367.1 224 79.0
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.3e-99 366.7 221 79.2
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-99 366.7 226 80.1
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.2e-99 365.9 224 77.2
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 4.9e-99 364.8 226 75.2
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 4.9e-99 364.8 228 76.8
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 6.4e-99 364.4 226 76.5
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-98 363.6 227 78.0
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-98 362.5 227 78.0
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 3.2e-98 362.1 225 77.8
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 4.2e-98 361.7 223 78.9
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 4.2e-98 361.7 226 75.7
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 5.4e-98 361.3 227 77.5
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 5.4e-98 361.3 226 75.2
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 5.4e-98 361.3 226 74.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 7.1e-98 360.9 226 77.0
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.2e-97 360.1 228 76.3
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.1e-97 359.4 217 79.3
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.7e-97 359.0 228 75.9
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.6e-97 358.2 224 79.5
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 4.6e-97 358.2 217 78.3
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 7.9e-97 357.5 226 79.2
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.9e-96 355.1 217 77.0
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 6.7e-96 354.4 222 75.7
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.1e-95 353.6 217 76.5
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.5e-95 353.2 225 75.6
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 5.6e-95 351.3 225 75.1
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 7.4e-95 350.9 225 74.7
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 9.6e-95 350.5 217 79.7
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.3e-94 350.1 222 75.2
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 4.8e-94 348.2 220 74.1
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 4.8e-94 348.2 215 77.2
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 6.2e-94 347.8 224 73.2
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 6.2e-94 347.8 224 73.2
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 1.4e-93 346.7 237 72.2
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.4e-93 346.7 221 74.7
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.4e-93 345.9 220 74.5
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.4e-93 345.9 220 74.5
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 3.1e-93 345.5 225 74.2
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 5.3e-93 344.7 220 74.1
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 1.5e-92 343.2 222 75.7
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.6e-92 342.4 220 74.5
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 4.5e-92 341.7 227 72.7
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 4.5e-92 341.7 231 73.6
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 5.8e-92 341.3 220 74.5
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 7.6e-92 340.9 220 74.1
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 7.6e-92 340.9 215 74.9
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.3e-91 340.1 205 79.5
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.3e-91 340.1 220 74.1
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 2.2e-91 339.3 204 79.4
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 3.8e-91 338.6 220 73.6
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 6.4e-91 337.8 218 74.8
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 8.4e-91 337.4 204 76.5
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.9e-90 336.3 230 73.5
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 2.5e-90 335.9 220 72.3
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.2e-90 335.1 226 74.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 4.2e-90 335.1 220 71.4
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-89 333.6 226 73.5
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 2.1e-89 332.8 224 72.3
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.1e-89 332.8 204 80.4
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 3.5e-89 332.0 209 76.1
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 3.5e-89 332.0 209 76.1
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 6.0e-89 331.3 220 72.3
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 6.0e-89 331.3 205 76.1
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.3e-88 330.1 210 72.9
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 8.7e-88 327.4 202 76.2
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 1.5e-87 326.6 204 76.5
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.5e-87 326.6 224 72.8
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 2.5e-87 325.9 252 66.3
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.3e-87 325.5 262 65.6
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.1e-86 322.8 210 72.9
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 6.9e-85 317.8 203 74.9
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 4.5e-84 315.1 206 73.8
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 5.8e-84 314.7 204 73.5
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.7e-83 313.2 203 74.9
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 8.4e-83 310.8 221 67.9
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 5.7e-79 298.1 193 76.2
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 2.8e-78 295.8 205 70.7
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 8.2e-78 294.3 202 69.3
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.4e-77 292.7 213 64.8
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 4.1e-77 292.0 211 64.0
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.6e-76 289.3 228 65.4
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 7.7e-76 287.7 216 63.4
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.3e-75 287.0 186 74.7
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 6.5e-75 284.6 211 67.8
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.6e-73 280.0 175 76.6
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.4e-72 276.9 223 63.2
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.0e-72 275.8 210 66.7
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.3e-71 271.9 224 61.2
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 1.3e-70 270.4 206 67.5
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 3.7e-70 268.9 160 82.5
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.0e-68 263.1 203 65.0
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.5e-68 261.9 231 60.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.1e-66 257.3 220 58.6
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 5.5e-66 255.0 159 77.4
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.2e-65 253.8 152 83.6
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.1e-64 248.4 211 61.6
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 3.3e-63 245.7 196 63.3
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 8.2e-62 241.1 213 56.3
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.8e-61 240.0 214 57.5
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 9.1e-61 237.7 171 73.7
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.2e-59 233.0 186 66.7
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.9e-58 229.9 209 56.9
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.6e-57 225.7 214 53.3
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.1e-57 224.9 209 55.0
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.3e-56 223.0 226 55.8
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 3.5e-52 209.1 216 50.0
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 3.1e-45 186.0 209 56.5
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 7.0e-45 184.9 117 79.5
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.1e-41 173.3 233 45.1
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.8e-40 170.2 235 41.7
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.6e-39 166.4 104 75.0
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.3e-38 164.1 111 69.4
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.2e-36 157.5 237 38.8
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 7.7e-36 154.8 119 70.6
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.3e-35 154.1 94 78.7
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 6.6e-35 151.8 221 40.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.5e-31 138.3 114 64.0
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 7.8e-28 128.3 78 82.1
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 9.5e-26 121.3 157 38.9
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 1.4e-24 117.5 79 69.6
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 8.3e-22 108.2 83 66.3
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.1e-18 97.8 73 64.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 4.0e-16 89.4 205 30.2
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 3.0e-11 73.2 105 42.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 4.7e-09 65.9 40 67.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 3.1e-08 63.2 77 53.2
arahy.Tifrunner.gnm1.ann1.VLQ3S7 Arachis hypogaea HOM05D001805 ORTHO05D001734 6.4e-06 55.5 50 54.0
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 6.4e-06 55.5 71 40.8


User provided reference genes

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