Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 9.2e-143 510.4 288 100.0
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 3.5e-110 402.1 313 76.0
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 3.0e-69 266.2 328 49.7
CiPaw.06G122100 Carya illinoinensis HOM05D029580 ORTHO05D028671 8.5e-48 194.9 276 50.4
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.2e-41 174.5 311 47.9
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 3.0e-37 159.8 327 38.5
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 9.8e-36 154.8 316 40.5
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 6.3e-35 152.1 322 37.6
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.7e-32 144.1 244 38.5
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 4.9e-27 125.9 304 32.9
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 9.2e-26 121.7 328 33.2
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 8.6e-24 115.2 330 34.5
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 7.3e-23 112.1 333 35.7
Thecc.02G060400 Theobroma cacao HOM05D015147 ORTHO05D003197 3.6e-22 109.8 209 35.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 2.3e-21 107.1 309 37.2
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 4.0e-21 106.3 222 33.3
Prupe.8G165300 Prunus persica HOM05D029580 ORTHO05D028671 1.5e-20 104.4 261 33.3
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 9.8e-20 101.7 224 34.8
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.3e-19 101.3 317 32.2
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.9e-19 99.4 314 32.8
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 6.4e-19 99.0 300 35.7
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-18 98.2 328 33.5
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.1e-18 96.3 326 34.0
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 4.1e-18 96.3 263 33.1
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 9.2e-18 95.1 323 36.2
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 9.2e-18 95.1 318 35.2
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.2e-17 94.7 323 33.7
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 2.0e-17 94.0 324 33.6
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 2.7e-17 93.6 329 28.6
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 3.5e-17 93.2 317 34.1
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.5e-17 93.2 223 34.5
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 6.0e-17 92.4 322 32.3
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 7.8e-17 92.0 219 33.8
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.0e-16 91.7 315 34.3
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 3.0e-16 90.1 227 33.9
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.9e-16 89.7 182 34.1
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.0e-16 89.4 337 32.6
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 6.6e-16 89.0 343 36.7
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 8.6e-16 88.6 317 34.4
Sabra09G0104600 Salix brachista HOM05D015147 ORTHO05D003197 1.1e-15 88.2 253 39.1
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.5e-15 87.8 306 29.4
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.9e-15 87.4 317 33.8
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 1.9e-15 87.4 240 31.2
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.9e-15 87.4 316 41.5
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 2.5e-15 87.0 308 31.5
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 3.3e-15 86.7 184 35.9
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 3.3e-15 86.7 351 34.8
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 4.3e-15 86.3 312 29.8
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 4.3e-15 86.3 329 28.0
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 5.6e-15 85.9 296 36.1
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 7.3e-15 85.5 355 35.2
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 1.2e-14 84.7 299 35.1
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.6e-14 84.3 318 34.3
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.8e-14 83.6 315 27.0
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 1.8e-13 80.9 312 33.3
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.3e-13 80.5 333 34.5
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 5.2e-13 79.3 367 25.9
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 5.2e-13 79.3 266 35.3
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.2e-12 78.2 299 29.1
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 2.0e-12 77.4 318 28.0
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 2.6e-12 77.0 233 29.6
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 3.4e-12 76.6 334 35.3
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.4e-12 76.6 336 33.3
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 4.4e-12 76.3 356 31.2
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.4e-12 76.3 292 28.8
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 5.8e-12 75.9 332 33.7
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.5e-12 75.5 337 33.8
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.5e-12 75.5 299 29.4
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.3e-11 74.7 299 32.8
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 2.2e-11 73.9 307 25.4
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.2e-11 73.9 232 29.3
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 2.2e-11 73.9 232 30.6
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 3.7e-11 73.2 305 30.2
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 6.4e-11 72.4 341 24.9
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 6.4e-11 72.4 312 31.7
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 8.3e-11 72.0 327 32.1
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.1e-10 71.6 311 28.3
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 1.1e-10 71.6 384 27.9
FvH4_2g01191 Fragaria vesca HOM05D029580 ORTHO05D028671 1.4e-10 71.2 249 32.5
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.9e-10 70.9 214 31.3
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 2.4e-10 70.5 369 31.4
FAN15G1030 Fragaria x ananassa HOM05D029580 ORTHO05D028671 2.4e-10 70.5 305 29.5
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 4.1e-10 69.7 300 24.0
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.4e-10 69.3 214 30.4
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 5.4e-10 69.3 342 29.2
Cpa.g.sc37.138 Carica papaya HOM05D015147 ORTHO05D003197 9.2e-10 68.6 180 32.2
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.2e-09 68.2 256 28.1
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.6e-09 67.8 186 28.5
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.1e-09 67.4 203 30.5
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.0e-08 65.1 221 28.5
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.3e-08 64.7 269 27.1
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 1.7e-08 64.3 317 30.0
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 2.3e-08 63.9 153 39.9
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 3.0e-08 63.5 305 29.8
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 3.9e-08 63.2 305 33.1
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 8.6e-08 62.0 106 34.9
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.5e-07 61.2 224 29.5
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.5e-07 61.2 202 27.7
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 3.3e-07 60.1 321 29.3
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 3.3e-07 60.1 75 41.3
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 4.3e-07 59.7 297 29.0
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 5.6e-07 59.3 267 25.8
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 5.6e-07 59.3 169 44.4
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 5.6e-07 59.3 229 24.5
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 7.3e-07 58.9 322 31.4
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 7.3e-07 58.9 325 32.3
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 9.5e-07 58.5 331 29.3
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.6e-06 57.8 303 23.8
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 2.8e-06 57.0 331 28.7
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 2.8e-06 57.0 229 28.8
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 3.6e-06 56.6 121 28.9
FvH4_1g11400 Fragaria vesca HOM05D024588 ORTHO05D003197 4.7e-06 56.2 153 49.7
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 4.7e-06 56.2 155 44.5
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 4.7e-06 56.2 185 40.0


User provided reference genes

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