Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 4.7e-297 1023.8 546 100.0
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 8.3e-286 986.5 546 95.2
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 4.3e-234 814.7 550 78.9
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 6.7e-227 790.8 522 81.2
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 8.7e-227 790.4 573 74.9
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 9.3e-221 770.4 542 74.7
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 6.3e-217 757.7 562 73.1
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 4.1e-216 755.0 562 73.3
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 4.5e-215 751.5 539 73.7
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 5.9e-215 751.1 555 71.5
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.6e-212 741.9 562 72.2
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 7.9e-212 740.7 553 72.3
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 3.0e-211 738.8 557 72.2
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.0e-211 738.8 558 72.9
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 8.7e-211 737.3 540 72.6
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.1e-210 736.9 562 72.4
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 2.5e-210 735.7 553 72.3
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 5.7e-210 734.6 551 70.4
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 9.7e-210 733.8 527 73.8
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 1.3e-209 733.4 562 71.9
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.6e-209 733.0 537 71.1
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 3.7e-209 731.9 554 71.1
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 1.4e-208 729.9 558 71.5
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.8e-208 729.6 557 70.6
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.2e-207 726.9 560 70.4
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 1.5e-207 726.5 555 72.8
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.5e-207 726.5 555 72.8
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 7.7e-207 724.2 561 69.2
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.3e-206 723.4 540 70.7
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 1.7e-206 723.0 560 68.9
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.4e-205 719.9 552 70.8
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 9.4e-205 717.2 555 72.6
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.2e-204 716.8 560 70.0
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.7e-204 715.7 554 68.6
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.6e-204 715.3 555 72.4
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 5.1e-203 711.4 563 69.8
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.7e-203 711.1 555 72.1
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 5.7e-202 708.0 528 73.3
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 9.7e-202 707.2 553 67.8
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 2.2e-201 706.1 560 68.4
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 3.7e-201 705.3 556 68.0
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.8e-200 703.0 544 69.9
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 2.4e-200 702.6 551 67.9
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 3.1e-200 702.2 545 69.0
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 3.1e-200 702.2 545 69.2
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 4.1e-200 701.8 552 68.3
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 6.9e-200 701.0 543 69.8
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.5e-199 699.9 555 67.6
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 1.7e-198 696.4 560 69.1
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 2.9e-198 695.7 552 67.9
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 2.9e-198 695.7 556 68.0
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 5.0e-198 694.9 554 69.1
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 1.1e-197 693.7 546 68.1
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 3.2e-197 692.2 545 68.6
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 4.2e-197 691.8 557 68.8
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 9.4e-197 690.6 539 68.1
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.1e-196 689.5 549 67.6
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 7.9e-196 687.6 553 67.5
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 1.0e-195 687.2 551 67.3
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.8e-195 686.4 540 68.9
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 1.8e-195 686.4 539 68.8
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.8e-195 686.4 538 68.0
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 2.3e-195 686.0 539 68.8
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 2.3e-195 686.0 541 68.2
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 3.0e-195 685.6 555 66.5
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 5.2e-195 684.9 567 66.1
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.7e-193 679.9 547 67.3
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.7e-193 679.9 556 64.9
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 8.2e-193 677.6 536 68.3
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 2.6e-191 672.5 536 67.2
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.0e-190 670.6 585 63.4
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.8e-190 668.7 536 66.8
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 6.5e-190 667.9 469 75.9
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 4.2e-189 665.2 546 65.8
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 5.5e-189 664.8 543 67.8
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 5.5e-189 664.8 575 64.5
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 9.4e-189 664.1 547 66.2
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 2.7e-188 662.5 552 66.7
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.7e-188 662.5 546 65.8
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 8.0e-188 661.0 561 66.3
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 2.3e-187 659.4 581 63.0
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 8.8e-187 657.5 607 61.3
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 3.3e-186 655.6 536 66.4
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 3.7e-185 652.1 547 65.4
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 4.8e-185 651.7 550 64.0
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 8.2e-185 651.0 546 66.5
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 4.5e-183 645.2 548 66.1
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.8e-182 642.1 534 63.9
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.8e-176 623.2 567 61.0
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 4.1e-176 622.1 568 60.4
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.0e-174 617.5 537 63.7
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 8.5e-174 614.4 548 61.3
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.6e-172 610.1 500 64.8
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 7.3e-165 584.7 591 57.2
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 1.5e-162 577.0 447 68.2
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 4.1e-152 542.3 512 61.1
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 4.3e-141 505.8 539 55.8
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.1e-139 501.1 393 69.7
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.2e-137 493.4 493 58.6
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 5.4e-136 488.8 583 48.2
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 7.6e-130 468.4 463 55.5
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 1.1e-128 464.5 353 71.7
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 2.1e-124 450.3 464 56.2
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 8.1e-116 421.8 352 66.5
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 4.2e-112 409.5 306 70.6
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.5e-109 401.0 306 69.3
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.3e-108 397.9 304 67.4
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.6e-108 397.5 388 57.5
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 2.1e-108 397.1 334 65.3
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 8.2e-108 395.2 304 69.4
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 1.3e-105 387.9 274 72.6
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 2.5e-104 383.6 346 61.3
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 2.5e-104 383.6 524 43.3
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 7.1e-104 382.1 346 61.0
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.1e-103 380.6 395 55.7
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.3e-89 334.7 523 39.2
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 3.6e-87 326.6 561 36.5
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 6.1e-87 325.9 269 65.4
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.8e-78 297.7 508 37.0
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 5.0e-73 279.6 342 52.6
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 4.0e-70 270.0 167 79.6
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 9.2e-51 205.7 262 50.0
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 2.0e-50 204.5 180 61.7
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.5e-50 203.8 186 57.5
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 3.8e-49 200.3 550 29.6
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.0e-41 175.6 125 70.4
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 3.3e-32 144.1 431 26.0
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 8.1e-31 139.4 341 26.7
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 4.0e-30 137.1 87 75.9
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 8.3e-28 129.4 92 66.3
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 5.4e-27 126.7 432 27.5
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 6.6e-25 119.8 74 73.0
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 2.4e-22 111.3 351 27.1
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.3e-17 95.5 537 23.8
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.1e-16 92.4 154 44.8
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.6e-16 90.1 147 42.2
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.2e-13 82.4 144 39.6
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 1.5e-13 82.0 509 23.2
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.3e-12 79.0 429 21.7
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 3.5e-10 70.9 234 30.8
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 1.3e-07 62.4 50 58.0
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 8.1e-07 59.7 219 25.6
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.1e-06 59.3 393 21.9
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 2.4e-06 58.2 219 25.1
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 5.3e-06 57.0 44 61.4


User provided reference genes

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